BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419536.2.1
(1366 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814875.1|CN814875 HRO4503_D10_H19ZS5 Lib AA071E1X Aven... 48 2e-005
emb|AJ010729.1|AFA010729 Avena fatua alpha-Amy2D gene, exon... 34 0.31
>gb|CN814875.1|CN814875 HRO4503_D10_H19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_D10_H19, mRNA sequence
Length = 846
Score = 48.1 bits (24), Expect = 2e-005
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 861 atgacgactgcgtgaagatactgaagaattgcaaaaaggctattcctccaagagaagccg 920
|||| ||||| || ||||||||||| || ||||| | ||||| ||| | ||||| ||||
Sbjct: 14 atgaagactgtgtcaagatactgaaaaaatgcaaggaagctatcccttccagagatgccg 73
Query: 921 gtggaaaggtgataat 936
|||| |||||||||||
Sbjct: 74 gtgggaaggtgataat 89
>emb|AJ010729.1|AFA010729 Avena fatua alpha-Amy2D gene, exons 1-4
Length = 2701
Score = 34.2 bits (17), Expect = 0.31
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 647 agctcgctcgtcgacgt 663
|||||||||||||||||
Sbjct: 1990 agctcgctcgtcgacgt 1974
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2732
Number of Sequences: 8143
Number of extensions: 2732
Number of successful extensions: 743
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 2
length of query: 1366
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1350
effective length of database: 4,572,175
effective search space: 6172436250
effective search space used: 6172436250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)