BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2419471.2.1
         (556 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815966.1|CN815966  HRO4515_D09_H17ZS5 Lib AA071E1X Aven...    38   0.008
gb|CN817543.1|CN817543  HRO4454_B01_D02ZS5 Lib AA070E1X Aven...    34   0.13 
gb|CN816606.1|CN816606  HRO4522_G03_M06ZS5 Lib AA071E1X Aven...    32   0.50 
gb|CN821254.1|CN821254  HRO4423_C03_F05ZS5 Lib AA069E1X Aven...    32   0.50 
gb|CN821415.1|CN821415  HRO4425_A10_A19ZS5 Lib AA069E1X Aven...    32   0.50 
gb|AM071401.1|AM071401  AM071401 Avena sativa leaf 3 weeks o...    32   0.50 

>gb|CN815966.1|CN815966 HRO4515_D09_H17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4515_D09_H17, mRNA sequence
          Length = 442

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 151 ccgccgccgccgcgcagca 169
           |||||||||||||||||||
Sbjct: 257 ccgccgccgccgcgcagca 275



>gb|CN817543.1|CN817543 HRO4454_B01_D02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4454_B01_D02, mRNA sequence
          Length = 496

 Score = 34.2 bits (17), Expect = 0.13
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 164 gcagcagcagcagatca 180
           |||||||||||||||||
Sbjct: 425 gcagcagcagcagatca 441



>gb|CN816606.1|CN816606 HRO4522_G03_M06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4522_G03_M06, mRNA sequence
          Length = 552

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 149 ccccgccgccgccgcgcagc 168
           ||||||||||||||| ||||
Sbjct: 29  ccccgccgccgccgcccagc 48



>gb|CN821254.1|CN821254 HRO4423_C03_F05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4423_C03_F05, mRNA
           sequence
          Length = 451

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 164 gcagcagcagcagatcagag 183
           ||||||||||||| ||||||
Sbjct: 392 gcagcagcagcagctcagag 373



>gb|CN821415.1|CN821415 HRO4425_A10_A19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4425_A10_A19, mRNA
           sequence
          Length = 604

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 165 cagcagcagcagatca 180
           ||||||||||||||||
Sbjct: 281 cagcagcagcagatca 296



>gb|AM071401.1|AM071401 AM071401 Avena sativa leaf 3 weeks old, post-germination Avena
          sativa cDNA clone ASCID1-1_003_a06, mRNA sequence
          Length = 870

 Score = 32.2 bits (16), Expect = 0.50
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                          
Query: 10 gagacgagacgagacg 25
          ||||||||||||||||
Sbjct: 39 gagacgagacgagacg 24



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1812
Number of Sequences: 8143
Number of extensions: 1812
Number of successful extensions: 562
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 10
length of query: 556
length of database: 4,702,463
effective HSP length: 16
effective length of query: 540
effective length of database: 4,572,175
effective search space: 2468974500
effective search space used: 2468974500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)