BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2419355.2.1
         (1174 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE439073.1|BE439073  CDO497_WHE2G0111F ITEC CDO Oat cDNA ...    40   0.004
gb|CN820249.1|CN820249  HRO4417_C01_E01ZS5 Lib AA069E1X Aven...    36   0.068

>gb|BE439073.1|BE439073 CDO497_WHE2G0111F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
           CDO497_WHE2G0111, mRNA sequence
          Length = 153

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 931 gtggctttgttcatgcagtc 950
           ||||||||||||||||||||
Sbjct: 36  gtggctttgttcatgcagtc 55



>gb|CN820249.1|CN820249 HRO4417_C01_E01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4417_C01_E01, mRNA
            sequence
          Length = 422

 Score = 36.2 bits (18), Expect = 0.068
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1031 cagaaaagtacattctgg 1048
            ||||||||||||||||||
Sbjct: 280  cagaaaagtacattctgg 297



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3004
Number of Sequences: 8143
Number of extensions: 3004
Number of successful extensions: 786
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 2
length of query: 1174
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1158
effective length of database: 4,572,175
effective search space: 5294578650
effective search space used: 5294578650
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)