BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.4
(591 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Aven... 72 6e-013
gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Aven... 72 6e-013
gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Aven... 72 6e-013
gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Aven... 72 6e-013
gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Aven... 56 4e-008
gb|CN819735.1|CN819735 HRO4403_E05_J09ZS5 Lib AA069E1X Aven... 54 1e-007
gb|CN820512.1|CN820512 HRO4413_C02_E03ZS5 Lib AA069E1X Aven... 54 1e-007
gb|CN819492.1|CN819492 HRO4406_G04_M08ZS5 Lib AA069E1X Aven... 50 2e-006
gb|CN817017.1|CN817017 HRO4527_D01_H01ZS5 Lib AA071E1X Aven... 48 9e-006
gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Aven... 46 4e-005
gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Aven... 46 4e-005
gb|CN821386.1|CN821386 HRO4424_G02_N04ZS5 Lib AA069E1X Aven... 46 4e-005
>gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A11_A22, mRNA sequence
Length = 684
Score = 71.9 bits (36), Expect = 6e-013
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||| | ||||| ||||||| |||||| || ||| | |||||||| |||||| ||||
Sbjct: 409 tgccgcaatggttgaggaggagggtgaggtcgacggggacgttgaggtggatgccaagga 350
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 349 cgttggccttgatggcggtgcagaggca 322
Score = 34.2 bits (17), Expect = 0.13
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 351 gttcagcaagttggcgcacacgcccagcttcag 383
|||||||| ||||||||||| ||||||||||
Sbjct: 237 gttcagcacattggcgcacacctccagcttcag 205
>gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_H01_O02, mRNA sequence
Length = 405
Score = 71.9 bits (36), Expect = 6e-013
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||| | ||||| ||||||| |||||| || ||| | |||||||| |||||| ||||
Sbjct: 113 tgccgcaatggttgaggaggagggtgaggtcgacggggacgttgaggtggatgccaagga 54
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 53 cgttggccttgatggcggtgcagaggca 26
>gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G06_M11, mRNA sequence
Length = 546
Score = 71.9 bits (36), Expect = 6e-013
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||| | ||||| ||||||| |||||| || ||| | |||||||| |||||| ||||
Sbjct: 255 tgccgcaatggttgaggaggagggtgaggtcgacggggacgttgaggtggatgccaagga 196
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 195 cgttggccttgatggcggtgcagaggca 168
Score = 34.2 bits (17), Expect = 0.13
Identities = 29/33 (87%)
Strand = Plus / Minus
Query: 351 gttcagcaagttggcgcacacgcccagcttcag 383
|||||||| ||||||||||| ||||||||||
Sbjct: 83 gttcagcacattggcgcacacctccagcttcag 51
>gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G03_N05, mRNA sequence
Length = 388
Score = 71.9 bits (36), Expect = 6e-013
Identities = 75/88 (85%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||| | ||||| ||||||| |||||| || ||| | |||||||| |||||| ||||
Sbjct: 115 tgccgcaatggttgaggaggagggtgaggtcgacggggacgttgaggtggatgccaagga 56
Query: 236 cgttggccctgaggacggtgcagaggca 263
|||||||| ||| | |||||||||||||
Sbjct: 55 cgttggccttgatggcggtgcagaggca 28
>gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_A03_A05, mRNA sequence
Length = 374
Score = 56.0 bits (28), Expect = 4e-008
Identities = 73/88 (82%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgaggttgatgcccagga 235
||||||| | ||||| ||||||| |||||| || || | |||||||| |||||| ||||
Sbjct: 103 tgccgcaatggttgaggaggaggttgaggtcgaccgggacgttgaggtggatgcctagga 44
Query: 236 cgttggccctgaggacggtgcagaggca 263
| |||||| ||| | |||||||||||||
Sbjct: 43 cattggccttgatggcggtgcagaggca 16
>gb|CN819735.1|CN819735 HRO4403_E05_J09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_E05_J09, mRNA
sequence
Length = 407
Score = 54.0 bits (27), Expect = 1e-007
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgagg 222
||||||||||||||| || ||||||||| |||||||| | |||||||
Sbjct: 57 tgccgcagtagttgaggatgaggctgagcttgatggggacgttgagg 11
>gb|CN820512.1|CN820512 HRO4413_C02_E03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_C02_E03, mRNA
sequence
Length = 457
Score = 54.0 bits (27), Expect = 1e-007
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgagg 222
||||||||||||||| || ||||||||| |||||||| | |||||||
Sbjct: 69 tgccgcagtagttgaggatgaggctgagcttgatggggacgttgagg 23
>gb|CN819492.1|CN819492 HRO4406_G04_M08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_G04_M08, mRNA
sequence
Length = 420
Score = 50.1 bits (25), Expect = 2e-006
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatggg 212
||||||||||||||| || ||||||||| ||||||||
Sbjct: 50 tgccgcagtagttgaggatgaggctgagcttgatggg 14
>gb|CN817017.1|CN817017 HRO4527_D01_H01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_D01_H01, mRNA sequence
Length = 447
Score = 48.1 bits (24), Expect = 9e-006
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 216 gttgaggttgatgcccaggacgttggccctgaggacggtgcagaggca 263
||||||||||||||| |||||||||||| | | | | |||||||||||
Sbjct: 139 gttgaggttgatgccgaggacgttggccttaatggcagtgcagaggca 92
>gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_D08_H16, mRNA sequence
Length = 419
Score = 46.1 bits (23), Expect = 4e-005
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 238 ttggccctgaggacggtgcagaggcacaccgccgc 272
|||||| ||| | ||||||||||||||||||||||
Sbjct: 62 ttggccttgatggcggtgcagaggcacaccgccgc 28
>gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_A05_B10, mRNA
sequence
Length = 457
Score = 46.1 bits (23), Expect = 4e-005
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 238 ttggccctgaggacggtgcagaggcacaccgccgc 272
|||||| ||| | ||||||||||||||||||||||
Sbjct: 100 ttggccttgatggcggtgcagaggcacaccgccgc 66
>gb|CN821386.1|CN821386 HRO4424_G02_N04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_G02_N04, mRNA
sequence
Length = 423
Score = 46.1 bits (23), Expect = 4e-005
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 176 tgccgcagtagttgacgaggaggctgaggttgatgggcaggttgagg 222
||||||||||||||| || ||||||||| | |||||| | |||||||
Sbjct: 53 tgccgcagtagttgaggatgaggctgagctagatggggacgttgagg 7
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 930
Number of Sequences: 8143
Number of extensions: 930
Number of successful extensions: 299
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 18
length of query: 591
length of database: 4,702,463
effective HSP length: 16
effective length of query: 575
effective length of database: 4,572,175
effective search space: 2629000625
effective search space used: 2629000625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)