BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.1
(690 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818093.1|CN818093 HRO4456_F01_K02ZS5 Lib AA070E1X Aven... 62 7e-010
gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Aven... 62 7e-010
gb|CN815127.1|CN815127 HRO4506_B09_C18ZS5 Lib AA071E1X Aven... 34 0.16
>gb|CN818093.1|CN818093 HRO4456_F01_K02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_F01_K02, mRNA sequence
Length = 414
Score = 61.9 bits (31), Expect = 7e-010
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
||||| || ||||| || || |||||||| ||||||||||||| || |||||||| |||
Sbjct: 23 tggtttcccttcgtctccgagttccagacgcggatgctgttcaatcaagcgttcagtaga 82
Query: 298 ggtctgcagatctcccgtatcct 320
|| || ||||||||||| |||||
Sbjct: 83 ggacttcagatctcccggatcct 105
>gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F09_K18, mRNA sequence
Length = 869
Score = 61.9 bits (31), Expect = 7e-010
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 238 tggttcccgttcgtgtcggaattccagaccaggatgctgttcaaccaggcgttcagcaga 297
||||| || ||||| || || |||||||| | ||||||||||| || ||||||||||||
Sbjct: 579 tggtttcccttcgtctccgagttccagacgcgaatgctgttcaatcaagcgttcagcaga 638
Query: 298 ggtctgcagatctcccgtatcct 320
|| || ||||||||||| |||||
Sbjct: 639 ggacttcagatctcccggatcct 661
>gb|CN815127.1|CN815127 HRO4506_B09_C18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_B09_C18, mRNA sequence
Length = 695
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 458 gagattgattgatcctgaaga 478
|||||||||||| ||||||||
Sbjct: 602 gagattgattgaacctgaaga 622
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2161
Number of Sequences: 8143
Number of extensions: 2161
Number of successful extensions: 743
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 3
length of query: 690
length of database: 4,702,463
effective HSP length: 16
effective length of query: 674
effective length of database: 4,572,175
effective search space: 3081645950
effective search space used: 3081645950
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)