BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2405245.2.3
         (2175 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816459.1|CN816459  HRO4521_A01_A01ZS5 Lib AA071E1X Aven...   214   2e-055

>gb|CN816459.1|CN816459 HRO4521_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4521_A01_A01, mRNA sequence
          Length = 435

 Score =  214 bits (108), Expect = 2e-055
 Identities = 174/196 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1343 tgcatcctgaccgagtgggacgagttcaagaccctggactaccagaagatcttcgacaac 1402
            |||||||| ||||||||||| ||||||||||  |||||||||||||||||||||||||||
Sbjct: 14   tgcatcctcaccgagtgggaggagttcaagaagctggactaccagaagatcttcgacaac 73

                                                                        
Query: 1403 atgcagaagcccgccttcgtcttcgacggccgcaacatcgtcgactccgagaagctgagg 1462
            ||||||||||||||||| ||||| || || |||||| | || ||  | |||||||| |||
Sbjct: 74   atgcagaagcccgcctttgtctttgatgggcgcaacgttgttgatgctgagaagctcagg 133

                                                                        
Query: 1463 gagatcggcttcatcgtctactccatcggcaagccgctcgacgcctggctcaaggacatg 1522
            ||||| |||||||||| ||||||||||||| |||||||||| || |||||||||||||||
Sbjct: 134  gagattggcttcatcggctactccatcggcgagccgctcgatgcgtggctcaaggacatg 193

                            
Query: 1523 cccgcggtcgcctaat 1538
            ||||| ||||| ||||
Sbjct: 194  cccgctgtcgcttaat 209



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5765
Number of Sequences: 8143
Number of extensions: 5765
Number of successful extensions: 1734
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1731
Number of HSP's gapped (non-prelim): 2
length of query: 2175
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2158
effective length of database: 4,564,032
effective search space: 9849181056
effective search space used: 9849181056
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)