BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405118.2.1
(1669 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814712.1|CN814712 HRO4501_F10_K19ZS5 Lib AA071E1X Aven... 38 0.025
gb|CN817558.1|CN817558 HRO4463_F11_K21ZS5 Lib AA070E1X Aven... 36 0.097
gb|CN818265.1|CN818265 HRO4470_D05_H10ZS5 Lib AA070E1X Aven... 36 0.097
gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Aven... 36 0.097
gb|CN819274.1|CN819274 HRO4452_B02_C04ZS5 Lib AA070E1X Aven... 36 0.097
gb|CN819439.1|CN819439 HRO4406_E01_I02ZS5 Lib AA069E1X Aven... 36 0.097
gb|CN819713.1|CN819713 HRO4403_C06_F11ZS5 Lib AA069E1X Aven... 36 0.097
gb|CN820257.1|CN820257 HRO4417_C11_E21ZS5 Lib AA069E1X Aven... 36 0.097
gb|CN819077.1|CN819077 HRO4455_D09_G17ZS5 Lib AA070E1X Aven... 34 0.38
gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocoty... 34 0.38
gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocoty... 34 0.38
emb|AM071409.1| Avena sativa partial mRNA for CBF-like tran... 34 0.38
>gb|CN814712.1|CN814712 HRO4501_F10_K19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_F10_K19, mRNA sequence
Length = 831
Score = 38.2 bits (19), Expect = 0.025
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 794 tcgatgatgtagtccagcg 812
|||||||||||||||||||
Sbjct: 656 tcgatgatgtagtccagcg 674
>gb|CN817558.1|CN817558 HRO4463_F11_K21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_F11_K21, mRNA sequence
Length = 401
Score = 36.2 bits (18), Expect = 0.097
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1319 acctcgccgaccacctcg 1336
||||||||||||||||||
Sbjct: 40 acctcgccgaccacctcg 57
>gb|CN818265.1|CN818265 HRO4470_D05_H10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_D05_H10, mRNA sequence
Length = 387
Score = 36.2 bits (18), Expect = 0.097
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1319 acctcgccgaccacctcg 1336
||||||||||||||||||
Sbjct: 104 acctcgccgaccacctcg 121
>gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_A01_B02, mRNA sequence
Length = 600
Score = 36.2 bits (18), Expect = 0.097
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1319 acctcgccgaccacctcg 1336
||||||||||||||||||
Sbjct: 267 acctcgccgaccacctcg 250
>gb|CN819274.1|CN819274 HRO4452_B02_C04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4452_B02_C04, mRNA sequence
Length = 317
Score = 36.2 bits (18), Expect = 0.097
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1319 acctcgccgaccacctcg 1336
||||||||||||||||||
Sbjct: 15 acctcgccgaccacctcg 32
>gb|CN819439.1|CN819439 HRO4406_E01_I02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_E01_I02, mRNA
sequence
Length = 387
Score = 36.2 bits (18), Expect = 0.097
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1319 acctcgccgaccacctcg 1336
||||||||||||||||||
Sbjct: 106 acctcgccgaccacctcg 123
>gb|CN819713.1|CN819713 HRO4403_C06_F11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_C06_F11, mRNA
sequence
Length = 398
Score = 36.2 bits (18), Expect = 0.097
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1319 acctcgccgaccacctcg 1336
||||||||||||||||||
Sbjct: 116 acctcgccgaccacctcg 133
>gb|CN820257.1|CN820257 HRO4417_C11_E21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_C11_E21, mRNA
sequence
Length = 476
Score = 36.2 bits (18), Expect = 0.097
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1319 acctcgccgaccacctcg 1336
||||||||||||||||||
Sbjct: 201 acctcgccgaccacctcg 218
>gb|CN819077.1|CN819077 HRO4455_D09_G17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_D09_G17, mRNA sequence
Length = 450
Score = 34.2 bits (17), Expect = 0.38
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 455 tccgccgccgccgcctccgcc 475
||||||||||||||| |||||
Sbjct: 70 tccgccgccgccgccgccgcc 50
>gb|AF033096.1|AF033096 Avena sativa nonphototropic hypocotyl 1 (NPH1-1) mRNA, complete cds
Length = 3467
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 456 ccgccgccgccgcctcc 472
|||||||||||||||||
Sbjct: 438 ccgccgccgccgcctcc 422
>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds
Length = 3422
Score = 34.2 bits (17), Expect = 0.38
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 457 cgccgccgccgcctccgcctc 477
||||||||||||| |||||||
Sbjct: 377 cgccgccgccgccgccgcctc 357
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 456 ccgccgccgccgcctcc 472
|||||||||||||||||
Sbjct: 372 ccgccgccgccgcctcc 356
>emb|AM071409.1| Avena sativa partial mRNA for CBF-like transcription factor (cbf4
gene)
Length = 848
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1272 ccacgtcgccgacgccg 1288
|||||||||||||||||
Sbjct: 154 ccacgtcgccgacgccg 170
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3590
Number of Sequences: 8143
Number of extensions: 3590
Number of successful extensions: 1131
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 30
length of query: 1669
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1652
effective length of database: 4,564,032
effective search space: 7539780864
effective search space used: 7539780864
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)