BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2405117.2.2
         (800 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN819887.1|CN819887  HRO4407_D04_H07ZS5 Lib AA069E1X Aven...   131   1e-030
gb|CN820999.1|CN820999  HRO4422_D06_G12ZS5 Lib AA069E1X Aven...    78   1e-014
gb|CN821378.1|CN821378  HRO4424_F06_L12ZS5 Lib AA069E1X Aven...    62   8e-010
gb|CN819667.1|CN819667  HRO4402_G07_M14ZS5 Lib AA069E1X Aven...    44   2e-004
gb|CN821226.1|CN821226  HRO4428_H09_P18ZS5 Lib AA069E1X Aven...    44   2e-004
gb|CN816002.1|CN816002  HRO4515_G10_N19ZS5 Lib AA071E1X Aven...    42   7e-004

>gb|CN819887.1|CN819887 HRO4407_D04_H07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4407_D04_H07, mRNA
           sequence
          Length = 164

 Score =  131 bits (66), Expect = 1e-030
 Identities = 87/94 (92%)
 Strand = Plus / Plus

                                                                       
Query: 272 ggtacaaccaggagctggacctcaccctgcagcagcggatgcgctgggtgcagcgcaagt 331
           |||||||||||||||||||||| ||   ||||||||||||||| ||||||||| |||| |
Sbjct: 1   ggtacaaccaggagctggacctgacgaggcagcagcggatgcggtgggtgcagagcaact 60

                                             
Query: 332 acatgatctacaactactgcaccgaccccaagcg 365
           ||||||||||||||||||||||||||||||||||
Sbjct: 61  acatgatctacaactactgcaccgaccccaagcg 94



>gb|CN820999.1|CN820999 HRO4422_D06_G12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4422_D06_G12, mRNA
           sequence
          Length = 324

 Score = 77.8 bits (39), Expect = 1e-014
 Identities = 48/51 (94%)
 Strand = Plus / Plus

                                                              
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgc 366
           ||||||||| | |||| ||||||||||||||||||||||||||||||||||
Sbjct: 97  tgggtgcagaggaagttcatgatctacaactactgcaccgaccccaagcgc 147



>gb|CN821378.1|CN821378 HRO4424_F06_L12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4424_F06_L12, mRNA
           sequence
          Length = 356

 Score = 61.9 bits (31), Expect = 8e-010
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                              
Query: 316 tgggtgcagcgcaagtacatgatctacaactactgcaccgaccccaagcgc 366
           ||||||||| | ||||  ||||||||||||||||| |||||||||||||||
Sbjct: 84  tgggtgcagaggaagtttatgatctacaactactgtaccgaccccaagcgc 134



>gb|CN819667.1|CN819667 HRO4402_G07_M14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4402_G07_M14, mRNA
           sequence
          Length = 393

 Score = 44.1 bits (22), Expect = 2e-004
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 337 atctacaactactgcaccgacc 358
           ||||||||||||||||||||||
Sbjct: 121 atctacaactactgcaccgacc 142



>gb|CN821226.1|CN821226 HRO4428_H09_P18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4428_H09_P18, mRNA
           sequence
          Length = 425

 Score = 44.1 bits (22), Expect = 2e-004
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 337 atctacaactactgcaccgacc 358
           ||||||||||||||||||||||
Sbjct: 165 atctacaactactgcaccgacc 186



>gb|CN816002.1|CN816002 HRO4515_G10_N19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4515_G10_N19, mRNA sequence
          Length = 609

 Score = 42.1 bits (21), Expect = 7e-004
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 372 gcagggcctccccgccgagtgctcc 396
           ||||||| |||||||||||||||||
Sbjct: 501 gcagggcttccccgccgagtgctcc 525



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1385
Number of Sequences: 8143
Number of extensions: 1385
Number of successful extensions: 439
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 10
length of query: 800
length of database: 4,702,463
effective HSP length: 16
effective length of query: 784
effective length of database: 4,572,175
effective search space: 3584585200
effective search space used: 3584585200
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)