BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404928.2.1
(932 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815408.1|CN815408 HRO4509_C11_E21ZS5 Lib AA071E1X Aven... 496 e-140
gb|CN819629.1|CN819629 HRO4402_D05_G10ZS5 Lib AA069E1X Aven... 400 e-112
gb|CN816540.1|CN816540 HRO4521_H08_O15ZS5 Lib AA071E1X Aven... 394 e-110
gb|CN815415.1|CN815415 HRO4509_D07_G13ZS5 Lib AA071E1X Aven... 242 5e-064
>gb|CN815408.1|CN815408 HRO4509_C11_E21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C11_E21, mRNA sequence
Length = 894
Score = 496 bits (250), Expect = e-140
Identities = 565/671 (84%)
Strand = Plus / Minus
Query: 229 agcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggccgcacttggg 288
||||||||||||||||| ||| || |||| ||| || || | ||| || ||||| |||
Sbjct: 729 agcttctgaatcttctgtgcaacaccagggtccttaagatgatgctgagcagcactaggg 670
Query: 289 ttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatgttctggatc 348
|||||||||||||| || | |||||||||||||||||||||||||| || ||||||
Sbjct: 669 ttctcctggaaatccatcaatacctgtcgcatgatagggtcggtaaggattccctggatt 610
Query: 349 tctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggcttatttcacct 408
|||||||| ||||||||||| ||||| | || || || || ||||| ||||| |||||
Sbjct: 609 tctgggtcctgcatagctttactctgtttctcctgtaagtcctcctgacttatatcaccc 550
Query: 409 ctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttg 468
||||| |||||||| ||||| |||| ||||||| | | ||||||||||||||| |||||
Sbjct: 549 ctgttagccttgttaatctgctcaatacacctccttataccatcaagcagttcttggtta 490
Query: 469 ttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatg 528
||||| || |||||||| ||||| ||||| ||||||| ||||| |||| ||||||||||
Sbjct: 489 ttcggatcgtgcttcaacccagcttggtaagtttccattgccttctcatgttctttcatg 430
Query: 529 aagaactgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttcaaga 588
|| ||||||||||||||||| || ||||||||||||| |||||| ||||| || |||| |
Sbjct: 429 aaaaactgaattgcaccttttcttgtataccctttggagaaggttgggtctagctcaata 370
Query: 589 cacttttctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcaggcggcc 648
|||||||| || |||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 369 cacttttcagcatctttaagaccttcaggcatggctcccaacttggtgtagcatgcagcc 310
Query: 649 ctattgctataaaccctaggatccttcgggtttctcttgagagcctccgtgtagtgtttt 708
|||||||| || ||| || |||||| ||||| ||| |||||||||| |||| || |||
Sbjct: 309 ctattgctgtacaccttaacatccttagggttcctcctgagagcctcattgtaatgcttt 250
Query: 709 attgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatct 768
||||||||||| || ||||| | |||||| | ||| || |||||||||||||||||||||
Sbjct: 249 attgcttctggatacttttgttgcttgaacatctcattacctttctctctctcctcatct 190
Query: 769 gccaattttggatcataaaactcttgttgctctaactctttctttgctttctcagcctca 828
|| | || || |||||| |||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 189 gctaccttcgggtcataatactcttgttgctctaagtctttctttgccttctcagcctca 130
Query: 829 nttaactttttaagagtttctgggttccgatgcncagtcagagccttctgggaggnctcg 888
||| | |||| ||||| || || ||||||||| |||| |||||||||||| | | ||||
Sbjct: 129 tttagccttttgagagtgtcaggattccgatgctcagttagagccttctggaaagtctcg 70
Query: 889 atagcaatatc 899
|| ||||||||
Sbjct: 69 atggcaatatc 59
>gb|CN819629.1|CN819629 HRO4402_D05_G10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_D05_G10, mRNA
sequence
Length = 766
Score = 400 bits (202), Expect = e-112
Identities = 457/542 (84%)
Strand = Plus / Minus
Query: 229 agcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggccgcacttggg 288
||||||||||||||||| ||| || |||| ||| || || | ||| || ||||| |||
Sbjct: 565 agcttctgaatcttctgtgcaacaccagggtccttaagatgatgctgagcagcactaggg 506
Query: 289 ttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatgttctggatc 348
|||||||||||||| || | |||||||||||||||||||||||||| || ||||||
Sbjct: 505 ttctcctggaaatccatcaatacctgtcgcatgatagggtcggtaaggattccctggatt 446
Query: 349 tctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggcttatttcacct 408
|||||||| ||||||||||| ||||| | || || || || ||||| ||||| |||||
Sbjct: 445 tctgggtcctgcatagctttactctgtttctcctgtaagtcctcctgacttatatcaccc 386
Query: 409 ctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttg 468
||||| |||||||| ||||| |||| ||||||| | | ||||||||||||||| |||||
Sbjct: 385 ctgttagccttgttaatctgctcaatacacctccttataccatcaagcagttcttggtta 326
Query: 469 ttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatg 528
||||| || |||||||| ||||| ||||| ||||||| ||||| |||| ||||||||||
Sbjct: 325 ttcggatcgtgcttcaacccagcttggtaagtttccattgccttctcatgttctttcatg 266
Query: 529 aagaactgaattgcacctttcctcgtataccctttggtgaaggtggggtcaagttcaaga 588
|| ||||||||||||||||| || ||||||||||||| |||||| ||||| || |||| |
Sbjct: 265 aaaaactgaattgcaccttttcttgtataccctttggagaaggttgggtctagctcaata 206
Query: 589 cacttttctgcgtctttaagaccttcaggcatggctcctaacttggtgtagcaggcggcc 648
|||||||| || |||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 205 cacttttcagcatctttaagaccttcaggcatggctcccaacttggtgtagcatgcagcc 146
Query: 649 ctattgctataaaccctaggatccttcgggtttctcttgagagcctccgtgtagtgtttt 708
|||||||| || ||| || |||||| ||||| ||| |||||||||| |||| || |||
Sbjct: 145 ctattgctgtacaccttaacatccttagggttcctcctgagagcctcattgtaatgcttt 86
Query: 709 attgcttctgggtatttttgctccttgaagaactcgttgcctttctctctctcctcatct 768
||||||||||| || ||||| | |||||| | ||| || |||||||||||||||||||||
Sbjct: 85 attgcttctggatacttttgttgcttgaacatctcattacctttctctctctcctcatct 26
Query: 769 gc 770
||
Sbjct: 25 gc 24
>gb|CN816540.1|CN816540 HRO4521_H08_O15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_H08_O15, mRNA sequence
Length = 771
Score = 394 bits (199), Expect = e-110
Identities = 418/491 (85%)
Strand = Plus / Minus
Query: 280 gcacttgggttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatg 339
||||| ||||||||||||||||| || | ||||||||||||||||| |||||||| |||
Sbjct: 522 gcactagggttctcctggaaatccatcaatacctgtcgcatgataggatcggtaaggatg 463
Query: 340 ttctggatctctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggctt 399
|||||| |||||||| ||||||||||| ||||| | || || || || ||||| |||
Sbjct: 462 ccctggatttctgggtcctgcatagctttactctgtttctcctgtaagtcctcctgactt 403
Query: 400 atttcacctctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagt 459
|| ||||| ||||| |||||||| ||||| |||| ||||||| | | |||||||||||||
Sbjct: 402 atatcacccctgttagccttgttaatctgctcaatacacctccttataccatcaagcagt 343
Query: 460 tcctggttgttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatat 519
|| ||||| ||||| || |||||||| ||||| ||||| ||||||| ||||| |||| |
Sbjct: 342 tcttggttattcggatcgtgcttcaacccagcttggtaagtttccattgccttctcatgt 283
Query: 520 tctttcatgaagaactgaattgcacctttcctcgtataccctttggtgaaggtggggtca 579
||||||||||| ||||||||||||||||| || ||||||||||||| |||||| |||||
Sbjct: 282 tctttcatgaaaaactgaattgcaccttttcttgtataccctttggagaaggttgggtct 223
Query: 580 agttcaagacacttttctgcgtctttaagaccttcaggcatggctcctaacttggtgtag 639
||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 222 agttcaatacacttttcagcatctttaagaccttcaggcatggctcccaacttggtgtag 163
Query: 640 caggcggccctattgctataaaccctaggatccttcgggtttctcttgagagcctccgtg 699
|| || ||||| ||||| || ||| || |||||| ||||| ||| |||||||||| ||
Sbjct: 162 catgcagccctgttgctgtacaccttaacatccttagggttcctcctgagagcctcattg 103
Query: 700 tagtgttttattgcttctgggtatttttgctccttgaagaactcgttgcctttctctctc 759
|| || |||||||||||||| || ||||| | |||||| | ||| || ||||||||||||
Sbjct: 102 taatgctttattgcttctggatacttttgttgcttgaacatctcattacctttctctctc 43
Query: 760 tcctcatctgc 770
|||||||||||
Sbjct: 42 tcctcatctgc 32
>gb|CN815415.1|CN815415 HRO4509_D07_G13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_D07_G13, mRNA sequence
Length = 725
Score = 242 bits (122), Expect = 5e-064
Identities = 293/350 (83%)
Strand = Plus / Plus
Query: 229 agcttctgaatcttctgcataaccccggggttcttcaggtgctcctgggccgcacttggg 288
||||||||||||||||| ||| || |||| ||| || || | ||| || ||||| |||
Sbjct: 226 agcttctgaatcttctgtgcaacaccagggtccttaagatgatgctgagcagcactaggg 285
Query: 289 ttctcctggaaatctattagaacctgtcgcatgatagggtcggtaagaatgttctggatc 348
|||||||||||||| || | |||||||||||||||||||||||||| || ||||||
Sbjct: 286 ttctcctggaaatccatcaatacctgtcgcatgatagggtcggtaaggattccctggatt 345
Query: 349 tctgggtcttgcatagctttgttctgtctttcttgcaattcgtcctggcttatttcacct 408
|||||||| ||||||||||| ||||| | || || || || ||||| ||||| |||||
Sbjct: 346 tctgggtcctgcatagctttactctgtttctcctgtaagtcctcctgacttatatcaccc 405
Query: 409 ctgttggccttgttgatctgttcaacacacctcttaacaccatcaagcagttcctggttg 468
||||| |||||||| ||||| |||| ||||||| | | ||||||||||||||| |||||
Sbjct: 406 ctgttagccttgttaatctgctcaatacacctccttataccatcaagcagttcttggtta 465
Query: 469 ttcgggtcatgcttcaagccagcctggtaggtttccacggccttgtcatattctttcatg 528
||||| || |||||||| ||||| ||||| ||||||| ||||| |||| ||||||||||
Sbjct: 466 ttcggatcgtgcttcaacccagcttggtaagtttccattgccttctcatgttctttcatg 525
Query: 529 aagaactgaattgcacctttcctcgtataccctttggtgaaggtggggtc 578
|| ||||||||||||||||| || ||||||||||||| |||||| |||||
Sbjct: 526 aaaaactgaattgcaccttttcttgtataccctttggagaaggttgggtc 575
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2395
Number of Sequences: 8143
Number of extensions: 2395
Number of successful extensions: 681
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 5
length of query: 932
length of database: 4,702,463
effective HSP length: 16
effective length of query: 916
effective length of database: 4,572,175
effective search space: 4188112300
effective search space used: 4188112300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)