BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404800.2.1
(1228 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814875.1|CN814875 HRO4503_D10_H19ZS5 Lib AA071E1X Aven... 70 5e-012
gb|CN820736.1|CN820736 HRO4414_A10_A20ZS5 Lib AA069E1X Aven... 40 0.005
gb|CN814894.1|CN814894 HRO4503_F08_L15ZS5 Lib AA071E1X Aven... 38 0.018
gb|CN816150.1|CN816150 HRO4517_E08_I15ZS5 Lib AA071E1X Aven... 36 0.071
>gb|CN814875.1|CN814875 HRO4503_D10_H19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_D10_H19, mRNA sequence
Length = 846
Score = 69.9 bits (35), Expect = 5e-012
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 359 tccaacaaccatatcaacgattatcacctttcctcctgcatccctggaaggtatagcttt 418
|||||| ||||||||||| ||||||||||| || || ||||| |||||||| |||||||
Sbjct: 108 tccaaccaccatatcaacaattatcaccttcccaccggcatctctggaagggatagcttc 49
Query: 419 cttacagttcttgagtatcttga 441
||| || || || ||||||||||
Sbjct: 48 cttgcattttttcagtatcttga 26
Score = 36.2 bits (18), Expect = 0.071
Identities = 30/34 (88%)
Strand = Plus / Minus
Query: 299 catgatgaagagatcaaacaagacctgagtctct 332
|||||| ||||||||||| || ||||| ||||||
Sbjct: 168 catgataaagagatcaaagaaaacctgtgtctct 135
>gb|CN820736.1|CN820736 HRO4414_A10_A20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_A10_A20, mRNA
sequence
Length = 351
Score = 40.1 bits (20), Expect = 0.005
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 180 gggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgctaaat 239
||||| |||||||||||||| | | ||||| || |||||||| |||||| | ||||||
Sbjct: 107 gggtacacctcgatgatggacctgatgcctagcactggtatgatcttgtagccactaaat 48
Query: 240 ccagcttc 247
|| |||||
Sbjct: 47 ccggcttc 40
>gb|CN814894.1|CN814894 HRO4503_F08_L15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_F08_L15, mRNA sequence
Length = 567
Score = 38.2 bits (19), Expect = 0.018
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 228 tagtcgctaaatccagctt 246
|||||||||||||||||||
Sbjct: 160 tagtcgctaaatccagctt 142
Score = 36.2 bits (18), Expect = 0.071
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 178 atgggtagacctcgatga 195
||||||||||||||||||
Sbjct: 210 atgggtagacctcgatga 193
>gb|CN816150.1|CN816150 HRO4517_E08_I15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E08_I15, mRNA sequence
Length = 455
Score = 36.2 bits (18), Expect = 0.071
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 178 atgggtagacctcgatga 195
||||||||||||||||||
Sbjct: 196 atgggtagacctcgatga 179
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2653
Number of Sequences: 8143
Number of extensions: 2653
Number of successful extensions: 686
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 7
length of query: 1228
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1212
effective length of database: 4,572,175
effective search space: 5541476100
effective search space used: 5541476100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)