BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2404800.2.1
         (1228 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814875.1|CN814875  HRO4503_D10_H19ZS5 Lib AA071E1X Aven...    70   5e-012
gb|CN820736.1|CN820736  HRO4414_A10_A20ZS5 Lib AA069E1X Aven...    40   0.005
gb|CN814894.1|CN814894  HRO4503_F08_L15ZS5 Lib AA071E1X Aven...    38   0.018
gb|CN816150.1|CN816150  HRO4517_E08_I15ZS5 Lib AA071E1X Aven...    36   0.071
>gb|CN814875.1|CN814875 HRO4503_D10_H19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4503_D10_H19, mRNA sequence
          Length = 846

 Score = 69.9 bits (35), Expect = 5e-012
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                       
Query: 359 tccaacaaccatatcaacgattatcacctttcctcctgcatccctggaaggtatagcttt 418
           |||||| ||||||||||| ||||||||||| || || ||||| |||||||| ||||||| 
Sbjct: 108 tccaaccaccatatcaacaattatcaccttcccaccggcatctctggaagggatagcttc 49

                                  
Query: 419 cttacagttcttgagtatcttga 441
           ||| || || || ||||||||||
Sbjct: 48  cttgcattttttcagtatcttga 26

 Score = 36.2 bits (18), Expect = 0.071
 Identities = 30/34 (88%)
 Strand = Plus / Minus

                                             
Query: 299 catgatgaagagatcaaacaagacctgagtctct 332
           |||||| ||||||||||| || ||||| ||||||
Sbjct: 168 catgataaagagatcaaagaaaacctgtgtctct 135
>gb|CN820736.1|CN820736 HRO4414_A10_A20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4414_A10_A20, mRNA
           sequence
          Length = 351

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 180 gggtagacctcgatgatggatcgaacacctagaacgggtatgattttgtagtcgctaaat 239
           ||||| |||||||||||||| |  |  ||||| || |||||||| |||||| | ||||||
Sbjct: 107 gggtacacctcgatgatggacctgatgcctagcactggtatgatcttgtagccactaaat 48

                   
Query: 240 ccagcttc 247
           || |||||
Sbjct: 47  ccggcttc 40
>gb|CN814894.1|CN814894 HRO4503_F08_L15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4503_F08_L15, mRNA sequence
          Length = 567

 Score = 38.2 bits (19), Expect = 0.018
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 228 tagtcgctaaatccagctt 246
           |||||||||||||||||||
Sbjct: 160 tagtcgctaaatccagctt 142

 Score = 36.2 bits (18), Expect = 0.071
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 178 atgggtagacctcgatga 195
           ||||||||||||||||||
Sbjct: 210 atgggtagacctcgatga 193
>gb|CN816150.1|CN816150 HRO4517_E08_I15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4517_E08_I15, mRNA sequence
          Length = 455

 Score = 36.2 bits (18), Expect = 0.071
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 178 atgggtagacctcgatga 195
           ||||||||||||||||||
Sbjct: 196 atgggtagacctcgatga 179
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2653
Number of Sequences: 8143
Number of extensions: 2653
Number of successful extensions: 686
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 7
length of query: 1228
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1212
effective length of database: 4,572,175
effective search space: 5541476100
effective search space used: 5541476100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)