BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306434.2.3
(3914 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Aven... 161 6e-039
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 127 8e-029
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 101 5e-021
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 94 1e-018
gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA ... 46 2e-004
gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Aven... 38 0.058
gb|CN815823.1|CN815823 HRO4510_H04_O08ZS5 Lib AA071E1X Aven... 36 0.23
gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Aven... 36 0.23
>gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A01_A02, mRNA sequence
Length = 474
Score = 161 bits (81), Expect = 6e-039
Identities = 153/177 (86%)
Strand = Plus / Minus
Query: 427 tccaggccacactcctccaggagcgggccgttgctcttggcgaggaacgggtcgacgcgg 486
|||| |||||||||||||||| ||||||| ||||||| ||||| |||| ||||||
Sbjct: 187 tccaagccacactcctccagggtagggccgtcagtcttggcaaggaaggggttgacgcgc 128
Query: 487 acccacaggagcgagaagatcgaggccagcaggatggaccagacgatgacgatcgtcggc 546
||||| |||||||||| ||| |||||||| ||||| |||||||||||||||||||||||
Sbjct: 127 acccaaaggagcgagatgatggaggccaggaggattgaccagacgatgacgatcgtcggg 68
Query: 547 gtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatcacc 603
|||||||||||||| || | ||||||||||||||| ||||| || ||||| ||||||
Sbjct: 67 gtcctgttctgccttccaagcagacccttgaggaatgggtagagatggacaatcacc 11
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 127 bits (64), Expect = 8e-029
Identities = 148/176 (84%)
Strand = Plus / Minus
Query: 486 gacccacaggagcgagaagatcgaggccagcaggatggaccagacgatgacgatcgtcgg 545
|||||| | ||| |||||||| ||||| ||||||| ||||||| | |||||| || ||
Sbjct: 268 gacccagacgagggagaagatggaggcgagcaggacagaccagagcacgacgatggtggg 209
Query: 546 cgtcctgttctgcctccccaccagacccttgaggaacgggtacaggtggacgatcaccca 605
||| | ||| |||||||||| || ||||||||||| ||||| ||||||||||| |||||
Sbjct: 208 cgtgcggttttgcctccccatgagccccttgaggaatgggtagaggtggacgatgaccca 149
Query: 606 gaaggcgaagaagagcttcccgaacagggggccccacgactcgtacccgttgttga 661
||||| ||||||||||||||||| ||||||||||| ||| |||| || |||||||
Sbjct: 148 gaaggaaaagaagagcttcccgaagagggggccccatgacccgtagccattgttga 93
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 101 bits (51), Expect = 5e-021
Identities = 111/131 (84%)
Strand = Plus / Minus
Query: 499 gagaagatcgaggccagcaggatggaccagacgatgacgatcgtcggcgtcctgttctgc 558
||||||||||| || || ||||| | ||||||||||||||||||||| || | ||| |
Sbjct: 159 gagaagatcgaagcgaggaggatagcccagacgatgacgatcgtcggtgtgcggtttgtc 100
Query: 559 ctccccaccagacccttgaggaacgggtacaggtggacgatcacccagaaggcgaagaag 618
|| |||| |||||||||||||||||||| | ||| || |||||||||||||| ||||||
Sbjct: 99 ctgcccataagacccttgaggaacgggtataagtgaacaatcacccagaaggcaaagaag 40
Query: 619 agcttcccgaa 629
||||| |||||
Sbjct: 39 agctttccgaa 29
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 93.7 bits (47), Expect = 1e-018
Identities = 119/143 (83%)
Strand = Plus / Minus
Query: 499 gagaagatcgaggccagcaggatggaccagacgatgacgatcgtcggcgtcctgttctgc 558
||||||||||| || || ||||| | |||||||||||| |||||||| || | ||| |
Sbjct: 248 gagaagatcgaagcgaggaggatagcccagacgatgacaatcgtcggtgtgcggtttgtc 189
Query: 559 ctccccaccagacccttgaggaacgggtacaggtggacgatcacccagaaggcgaagaag 618
|| |||| |||||||||||||| ||||| | ||| || |||||||||||||| ||||||
Sbjct: 188 ctgcccataagacccttgaggaatgggtataagtgaacaatcacccagaaggcaaagaag 129
Query: 619 agcttcccgaacagggggcccca 641
||||| |||||||| || |||||
Sbjct: 128 agctttccgaacagcggccccca 106
>gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1430_WHE05G09, mRNA sequence
Length = 177
Score = 46.1 bits (23), Expect = 2e-004
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 1775 tgaaaacaca-tccagtacccacataaatgggcccttgaataccatc 1820
|||||||||| |||||| |||||||||| ||||||||||| |||||
Sbjct: 57 tgaaaacacaatccagttcccacataaactggcccttgaatgccatc 11
>gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E02_J03, mRNA sequence
Length = 683
Score = 38.2 bits (19), Expect = 0.058
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 3134 tcttgcccccgccgccgccgccg 3156
||||||| |||||||||||||||
Sbjct: 47 tcttgccgccgccgccgccgccg 25
>gb|CN815823.1|CN815823 HRO4510_H04_O08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_H04_O08, mRNA sequence
Length = 582
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 3140 ccccgccgccgccgccgc 3157
||||||||||||||||||
Sbjct: 1 ccccgccgccgccgccgc 18
>gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_C10_F19, mRNA sequence
Length = 515
Score = 36.2 bits (18), Expect = 0.23
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 499 gagaagatcgaggccagcaggatggaccagacgatgac 536
||||||||||| || || ||||| | ||||||||||||
Sbjct: 48 gagaagatcgaagcgaggaggatagcccagacgatgac 11
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9670
Number of Sequences: 8143
Number of extensions: 9670
Number of successful extensions: 2645
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2622
Number of HSP's gapped (non-prelim): 19
length of query: 3914
length of database: 4,702,463
effective HSP length: 17
effective length of query: 3897
effective length of database: 4,564,032
effective search space: 17786032704
effective search space used: 17786032704
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)