BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276562.2.1
(1286 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820263.1|CN820263 HRO4417_D05_G09ZS5 Lib AA069E1X Aven... 258 1e-068
>gb|CN820263.1|CN820263 HRO4417_D05_G09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_D05_G09, mRNA
sequence
Length = 592
Score = 258 bits (130), Expect = 1e-068
Identities = 331/398 (83%)
Strand = Plus / Minus
Query: 277 ctccagcggcacactgtttctcttctgataagcctcctttatcagcttcaggtcgacctc 336
||||||||| ||||||||||||||| | || |||||||| |||||||||||||| |||||
Sbjct: 417 ctccagcgggacactgtttctcttcaggtaggcctccttgatcagcttcaggtccacctc 358
Query: 337 ggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatgcctccaagagc 396
||||||||| |||| || ||| || ||| | ||| || ||||| | |||||||||||
Sbjct: 357 ggcgcgagtggttatgatccttgtaagggagttctcgtctgtgccgacacctccaagagc 298
Query: 397 cagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccg 456
|| || |||| ||||| ||||||||||||||||||| |||||||| ||||||||||
Sbjct: 297 caaccggatgatcttctcaaagtatctgtcagggcaggcgaagcaccttatgatcgccct 238
Query: 457 cagtgttgaaagaaactcatccttggggtcagctttcagatccttgttgattgcatgagt 516
||| || | || |||||||||||||| || | ||||| |||||| |||| | |||| |
Sbjct: 237 cagggtcgccaggaactcatccttgggatcctccttcaggtccttggtgatgggatgact 178
Query: 517 gaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgag 576
||||||||| ||||| || ||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 177 gaactgatcattgtaactgttgaatgttgcaagtagctgagctttgctccttgtagtgag 118
Query: 577 aattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtatttt 636
||| || || || ||||| |||| |||||||||| |||||||| |||| |||| |||
Sbjct: 117 aatcctgataatttcctcgtcaccataagccttctcctggatcttaccatggagtaattt 58
Query: 637 ggcttcagaatgagccaaagatgtgttcacctctgggc 674
||| ||||| || |||| |||||||||||||||||||
Sbjct: 57 ggcctcagagtgtgccactgatgtgttcacctctgggc 20
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2960
Number of Sequences: 8143
Number of extensions: 2960
Number of successful extensions: 958
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 3
length of query: 1286
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1270
effective length of database: 4,572,175
effective search space: 5806662250
effective search space used: 5806662250
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)