BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276343.2.2
(1340 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818417.1|CN818417 HRO4469_B04_D07ZS5 Lib AA070E1X Aven... 123 4e-028
gb|CN820987.1|CN820987 HRO4422_C03_E06ZS5 Lib AA069E1X Aven... 50 5e-006
gb|CN820362.1|CN820362 HRO4418_E04_I08ZS5 Lib AA069E1X Aven... 46 8e-005
emb|Z83832.1|ASSGT Avena sativa mRNA for UDP-glucose:sterol... 36 0.078
>gb|CN818417.1|CN818417 HRO4469_B04_D07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_B04_D07, mRNA sequence
Length = 457
Score = 123 bits (62), Expect = 4e-028
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 856 acaatagtccaagagcagggatctttggataactccaaaaccgagagctatgtaaagagc 915
|||||||| ||| ||||||||||| |||||||||||||||| ||| ||||||||||| |
Sbjct: 15 acaatagttcaaaagcagggatctctggataactccaaaactgagctctatgtaaagaac 74
Query: 916 ctgcagatggaaggaaggtacctccgtgatgtatggtgacac 957
|| ||||||||||| |||||||||||||||||||||| ||||
Sbjct: 75 ctacagatggaaggcaggtacctccgtgatgtatggtaacac 116
Score = 34.2 bits (17), Expect = 0.31
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1234 agtttgagatgaggaca 1250
|||||||||||||||||
Sbjct: 370 agtttgagatgaggaca 386
>gb|CN820987.1|CN820987 HRO4422_C03_E06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_C03_E06, mRNA
sequence
Length = 649
Score = 50.1 bits (25), Expect = 5e-006
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 502 ccgattatcatgattggtcctgggacagggctggctccttttagaggcttcttgcaggaa 561
||||||||||||||||| || || ||||| || || ||||| | ||||||||||||||
Sbjct: 122 ccgattatcatgattggcccaggaacaggtcttgcacctttccgcggcttcttgcaggag 181
Query: 562 aggtt 566
|||||
Sbjct: 182 aggtt 186
Score = 38.2 bits (19), Expect = 0.020
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 805 gtttgcggtgatgccaagggaatggctagagatgt 839
||||||||||||||||| || ||||| | ||||||
Sbjct: 425 gtttgcggtgatgccaaaggcatggccaaagatgt 459
>gb|CN820362.1|CN820362 HRO4418_E04_I08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_E04_I08, mRNA
sequence
Length = 519
Score = 46.1 bits (23), Expect = 8e-005
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 793 ggttacttatatgtttgcggtgatgccaagggaatggctagagatgt 839
|||||| | |||||||||||||||||||| || ||||| | ||||||
Sbjct: 70 ggttacatttatgtttgcggtgatgccaaaggcatggccaaagatgt 116
>emb|Z83832.1|ASSGT Avena sativa mRNA for UDP-glucose:sterol glucosyltransferase
Length = 2317
Score = 36.2 bits (18), Expect = 0.078
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1295 gaaggctaccgaaaccaa 1312
||||||||||||||||||
Sbjct: 1414 gaaggctaccgaaaccaa 1397
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3664
Number of Sequences: 8143
Number of extensions: 3664
Number of successful extensions: 1030
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 10
length of query: 1340
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1324
effective length of database: 4,572,175
effective search space: 6053559700
effective search space used: 6053559700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)