BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192958.2.3
(1681 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN180781.1|CN180781 As03_isu1961_C ISU cDNA from oat Ave... 652 0.0
gb|CN815487.1|CN815487 HRO4512_B12_D24ZS5 Lib AA071E1X Aven... 36 0.098
gb|CN817917.1|CN817917 HRO4462_B10_D20ZS5 Lib AA070E1X Aven... 36 0.098
gb|CN819476.1|CN819476 HRO4406_E03_I06ZS5 Lib AA069E1X Aven... 36 0.098
gb|CN818049.1|CN818049 HRO4472_C07_E14ZS5 Lib AA070E1X Aven... 34 0.39
gb|CN821590.1|CN821590 HRO4408_A08_B16ZS5 Lib AA069E1X Aven... 34 0.39
>gb|CN180781.1|CN180781 As03_isu1961_C ISU cDNA from oat Avena sativa cDNA clone
As03_isu1961, mRNA sequence
Length = 1004
Score = 652 bits (329), Expect = 0.0
Identities = 703/827 (85%), Gaps = 3/827 (0%)
Strand = Plus / Plus
Query: 412 ggcatgtcctcatcctcgtcgtaggcctcctgg---tgctgctgctgccgcctccgcatc 468
||||||||||| ||||| || |||||||||||| ||||| ||||||||||||| ||||
Sbjct: 175 ggcatgtcctcgtcctcatcataggcctcctgggcctgctgttgctgccgcctcctcatc 234
Query: 469 tccgcttcgatgttcacgtcatagggcatcgtctcctcgcactcgtccagctccatgtcg 528
||| | ||||||| | |||||| | ||| |||||||| ||||| || |||||||||||
Sbjct: 235 tcctcctcgatgtcaatgtcatacgccatagtctcctcacactcatctagctccatgtcc 294
Query: 529 gtgtactgcgacaccggcttgggcgggagcacagcctccagggccttgcactgctccggg 588
|||||||||||||| ||||||||||| || |||| ||| |||||||||||||| ||||||
Sbjct: 295 gtgtactgcgacacgggcttgggcggcaggacagtctctagggccttgcactggtccggg 354
Query: 589 ctcagcgagtccgggaactccaccgagaagtggatgtacagcttgcccttcatgaacggc 648
|||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 355 ttcagcgagtccgggaagtccaccgtgaagtggatgtagagcttgcccttcatgaacggc 414
Query: 649 ctctggtacatgggcatgccttcgtcgttgatcgccttgaaagaatcaggcttcacaact 708
|||||||||||||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct: 415 ctctggtacatgggcatgccctcgtcgttgatcgccttgaacgagtcaggcttaacaact 474
Query: 709 tcgcccggatttgatttgatcagcagctgcctgttatccaagtgagtcacaacaaactgg 768
|| || ||||| || ||||| |||||||||||| ||||| ||||| | |||| | |||
Sbjct: 475 tccccaggattggacttgatgagcagctgcctgccgtccaaatgagtaagaacatattgg 534
Query: 769 aagccacacagagattcagtcaaggtcagggtgtgctcgtagaagaggtcatcacccttt 828
||||||||||| | |||||| | |||||| |||||||| ||||||||||| || |||||
Sbjct: 535 aagccacacagggcttcagtgagggtcagagtgtgctcatagaagaggtcgtcgcccttc 594
Query: 829 ctcttgaacttgggatgctccttctgctggagaacaaagatgatatctccagtgacagtg 888
| ||||||||||||||||||||||||||| || || ||||| || || ||||| || ||
Sbjct: 595 cgcttgaacttgggatgctccttctgctgtaggacgaagattatgtccccagtaacggta 654
Query: 889 tcaggcgcttcatcagcttcaccagggaatgtgatcttctgcccattctgcatgcctttc 948
|||||||||||||| || || |||||||| ||||||||||| | | |||||| || |||
Sbjct: 655 tcaggcgcttcatcggcctcgccagggaaggtgatcttctggctgtgctgcatacccttc 714
Query: 949 tccacaaacacttcaagaaccttcttctcctgcacaactttatcacccttgcactgtggg 1008
|| || | || || |||||||||||||| |||||||| || || |||||||||||
Sbjct: 715 tcgaccactacctccagaaccttcttctcttgcacaaccttctcgcccttgcactgccca 774
Query: 1009 catctatccttgtcgctgattgtctctccagaacccttgcactcgttgcaaggatgctgc 1068
|||||||||||||||||||| ||||| |||| ||| ||||||| |||||||| ||||||
Sbjct: 775 catctatccttgtcgctgatggtctcaccagttcccctgcactcattgcaaggttgctgc 834
Query: 1069 atttgctggatcattccaggccccaactgcctgatttggaccttaaagccagaaccttgg 1128
|||||||| |||||||| || |||||||| | |||||||||||| | || | || |||
Sbjct: 835 atttgctgaatcattcctggtcccaactggcgtatttggaccttataaccggctccctgg 894
Query: 1129 caaccagcacacctcgatgaagctccagactttgaacccttaccattgcacttggagcag 1188
||||| |||||| || ||||| ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 895 caaccggcacacttcatcgaagccccagactttgagcccttgccattgcactttgagcag 954
Query: 1189 aggacactgcgggacagagagagcttctttgatgtgccattgtacaa 1235
|| ||| |||| || ||||| |||||||| |||||||||||||||||
Sbjct: 955 agcacattgcgtgaaagagaaagcttcttagatgtgccattgtacaa 1001
>gb|CN815487.1|CN815487 HRO4512_B12_D24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4512_B12_D24, mRNA sequence
Length = 623
Score = 36.2 bits (18), Expect = 0.098
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1365 catcccaccaccgcctcc 1382
||||||||||||||||||
Sbjct: 19 catcccaccaccgcctcc 36
>gb|CN817917.1|CN817917 HRO4462_B10_D20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_B10_D20, mRNA sequence
Length = 822
Score = 36.2 bits (18), Expect = 0.098
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1469 gctccttgaacttctcgg 1486
||||||||||||||||||
Sbjct: 502 gctccttgaacttctcgg 485
>gb|CN819476.1|CN819476 HRO4406_E03_I06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_E03_I06, mRNA
sequence
Length = 535
Score = 36.2 bits (18), Expect = 0.098
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 445 tgctgctgctgccgcctc 462
||||||||||||||||||
Sbjct: 56 tgctgctgctgccgcctc 73
>gb|CN818049.1|CN818049 HRO4472_C07_E14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_C07_E14, mRNA sequence
Length = 791
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1470 ctccttgaacttctcgg 1486
|||||||||||||||||
Sbjct: 451 ctccttgaacttctcgg 435
>gb|CN821590.1|CN821590 HRO4408_A08_B16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_A08_B16, mRNA
sequence
Length = 654
Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1470 ctccttgaacttctcgg 1486
|||||||||||||||||
Sbjct: 371 ctccttgaacttctcgg 355
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5094
Number of Sequences: 8143
Number of extensions: 5094
Number of successful extensions: 1586
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1575
Number of HSP's gapped (non-prelim): 7
length of query: 1681
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1664
effective length of database: 4,564,032
effective search space: 7594549248
effective search space used: 7594549248
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)