BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192958.2.2
(1723 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN180781.1|CN180781 As03_isu1961_C ISU cDNA from oat Ave... 295 7e-080
gb|CN817917.1|CN817917 HRO4462_B10_D20ZS5 Lib AA070E1X Aven... 36 0.10
gb|CN817608.1|CN817608 HRO4463_D07_G13ZS5 Lib AA070E1X Aven... 34 0.40
gb|CN818049.1|CN818049 HRO4472_C07_E14ZS5 Lib AA070E1X Aven... 34 0.40
gb|CN821590.1|CN821590 HRO4408_A08_B16ZS5 Lib AA069E1X Aven... 34 0.40
gb|BQ548074.1|BQ548074 CDO431-3 CDO Avena sativa cDNA clone... 32 1.6
gb|CN819141.1|CN819141 HRO4468_F08_K16ZS5 Lib AA070E1X Aven... 32 1.6
gb|CN819623.1|CN819623 HRO4402_C09_E18ZS5 Lib AA069E1X Aven... 32 1.6
gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocoty... 32 1.6
gb|AY847062.1| Avena sativa Aux/IAA1 mRNA, partial cds 32 1.6
gb|CK780276.1|CK780276 umn498 UMN cDNA from oat Avena sativ... 30 6.2
gb|CN814761.1|CN814761 HRO4502_B12_C24ZS5 Lib AA071E1X Aven... 30 6.2
gb|CN816384.1|CN816384 HRO4520_B03_D06ZS5 Lib AA071E1X Aven... 30 6.2
gb|CN816719.1|CN816719 HRO4524_A03_B06ZS5 Lib AA071E1X Aven... 30 6.2
gb|CN816941.1|CN816941 HRO4526_E03_I06ZS5 Lib AA071E1X Aven... 30 6.2
gb|CN817521.1|CN817521 HRO4458_F03_L06ZS5 Lib AA070E1X Aven... 30 6.2
gb|CN817674.1|CN817674 HRO4461_H05_P09ZS5 Lib AA070E1X Aven... 30 6.2
gb|CN818002.1|CN818002 HRO4456_D05_G10ZS5 Lib AA070E1X Aven... 30 6.2
gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Aven... 30 6.2
gb|CN818748.1|CN818748 HRO4468_C02_E04ZS5 Lib AA070E1X Aven... 30 6.2
gb|CN818853.1|CN818853 HRO4473_F02_XXXZS5 Lib AA070E1X Aven... 30 6.2
gb|CN819203.1|CN819203 HRO4451_C12_E23ZS5 Lib AA070E1X Aven... 30 6.2
gb|CN819424.1|CN819424 HRO4405_H04_O07ZS5 Lib AA069E1X Aven... 30 6.2
gb|CN820345.1|CN820345 HRO4418_C10_E20ZS5 Lib AA069E1X Aven... 30 6.2
gb|CN820375.1|CN820375 HRO4418_F07_K14ZS5 Lib AA069E1X Aven... 30 6.2
gb|CN820601.1|CN820601 HRO4415_C11_F21ZS5 Lib AA069E1X Aven... 30 6.2
gb|CN820630.1|CN820630 HRO4415_F04_L07ZS5 Lib AA069E1X Aven... 30 6.2
gb|CN820659.1|CN820659 HRO4415_H10_P19ZS5 Lib AA069E1X Aven... 30 6.2
gb|CN821445.1|CN821445 HRO4425_D08_G15ZS5 Lib AA069E1X Aven... 30 6.2
gb|CN821555.1|CN821555 HRO4426_F07_K14ZS5 Lib AA069E1X Aven... 30 6.2
gb|CN821594.1|CN821594 HRO4408_A12_B24ZS5 Lib AA069E1X Aven... 30 6.2
>gb|CN180781.1|CN180781 As03_isu1961_C ISU cDNA from oat Avena sativa cDNA clone
As03_isu1961, mRNA sequence
Length = 1004
Score = 295 bits (149), Expect = 7e-080
Identities = 428/521 (82%)
Strand = Plus / Plus
Query: 603 gtctcgagagccttgcactgctctggtgccagcgagtcggggaactccaccgtgaaatga 662
||||| || ||||||||||| || || ||||||||| ||||| ||||||||||| ||
Sbjct: 328 gtctctagggccttgcactggtccgggttcagcgagtccgggaagtccaccgtgaagtgg 387
Query: 663 atgtacagcttccccttcatgaaaggcctctggtaaatcggcatcccctcatcgtttatt 722
||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| ||||| ||
Sbjct: 388 atgtagagcttgcccttcatgaacggcctctggtacatgggcatgccctcgtcgttgatc 447
Query: 723 gccttgaattggtcaggtttaacaacttcaccagggtctgatttgatgagaagctgcctg 782
|||||||| |||||| ||||||||||| ||||| | || |||||||| |||||||||
Sbjct: 448 gccttgaacgagtcaggcttaacaacttccccaggattggacttgatgagcagctgcctg 507
Query: 783 ttgtccagatgtgtaagaacaaattggaacccacatagtgcttcggtcagagacaaggtg 842
||||| ||| ||||||||| ||||||| ||||| || ||||| || || | || |||
Sbjct: 508 ccgtccaaatgagtaagaacatattggaagccacacagggcttcagtgagggtcagagtg 567
Query: 843 tgctcatagaagagatcttcaccctttcttttgaacttggagtggtccttctgctggagg 902
|||||||||||||| || || ||||| | |||||||||| || ||||||||||| |||
Sbjct: 568 tgctcatagaagaggtcgtcgcccttccgcttgaacttgggatgctccttctgctgtagg 627
Query: 903 acgaatacaatgtctccagtaacggtatcaggcgcttcatcagcttcaccagggaaggtg 962
||||| | ||||| |||||||||||||||||||||||||| || || ||||||||||||
Sbjct: 628 acgaagattatgtccccagtaacggtatcaggcgcttcatcggcctcgccagggaaggtg 687
Query: 963 atcttctggctgtgttgcattcccttctcaacatgaacctcaagaaccttcttctcctga 1022
|||||||||||||| ||||| |||||||| || ||||| |||||||||||||| ||
Sbjct: 688 atcttctggctgtgctgcatacccttctcgaccactacctccagaaccttcttctcttgc 747
Query: 1023 acgaccttctcacccttacaccctgggcagcggtccttctcgttgatgctctccccagtc 1082
|| |||||||| ||||| ||| || | ||||| ||| ||||| |||| |||||
Sbjct: 748 acaaccttctcgcccttgcactgcccacatctatccttgtcgctgatggtctcaccagtt 807
Query: 1083 cccttgcactcgttgcaaggctgctgcatctgctgtatcat 1123
||| ||||||| |||||||| |||||||| ||||| |||||
Sbjct: 808 cccctgcactcattgcaaggttgctgcatttgctgaatcat 848
Score = 79.8 bits (40), Expect = 7e-015
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 1183 tcattgaagcaccagacttcgagcccttgcccttgcacttggagcagatgacattgcgcg 1242
|||| ||||| |||||||| ||||||||||| |||||||| ||||||| |||||||| |
Sbjct: 908 tcatcgaagccccagactttgagcccttgccattgcactttgagcagagcacattgcgtg 967
Query: 1243 aaagagagagcttctt 1258
||||||| ||||||||
Sbjct: 968 aaagagaaagcttctt 983
Score = 30.2 bits (15), Expect = 6.2
Identities = 30/35 (85%)
Strand = Plus / Plus
Query: 447 ggcatctcgtcgtcctcctcgtacgcctcctgggc 481
||||| || |||||||| || || |||||||||||
Sbjct: 175 ggcatgtcctcgtcctcatcataggcctcctgggc 209
>gb|CN817917.1|CN817917 HRO4462_B10_D20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_B10_D20, mRNA sequence
Length = 822
Score = 36.2 bits (18), Expect = 0.10
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1510 gctccttgaacttctcgg 1527
||||||||||||||||||
Sbjct: 502 gctccttgaacttctcgg 485
>gb|CN817608.1|CN817608 HRO4463_D07_G13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_D07_G13, mRNA sequence
Length = 850
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 663 atgtacagcttcccctt 679
|||||||||||||||||
Sbjct: 182 atgtacagcttcccctt 166
>gb|CN818049.1|CN818049 HRO4472_C07_E14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_C07_E14, mRNA sequence
Length = 791
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1511 ctccttgaacttctcgg 1527
|||||||||||||||||
Sbjct: 451 ctccttgaacttctcgg 435
>gb|CN821590.1|CN821590 HRO4408_A08_B16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_A08_B16, mRNA
sequence
Length = 654
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1511 ctccttgaacttctcgg 1527
|||||||||||||||||
Sbjct: 371 ctccttgaacttctcgg 355
>gb|BQ548074.1|BQ548074 CDO431-3 CDO Avena sativa cDNA clone CDO431 3', mRNA sequence
Length = 553
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1343 gcttccaccacctcct 1358
||||||||||||||||
Sbjct: 10 gcttccaccacctcct 25
>gb|CN819141.1|CN819141 HRO4468_F08_K16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_F08_K16, mRNA sequence
Length = 818
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 652 ccgtgaaatgaatgta 667
||||||||||||||||
Sbjct: 463 ccgtgaaatgaatgta 448
>gb|CN819623.1|CN819623 HRO4402_C09_E18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_C09_E18, mRNA
sequence
Length = 448
Score = 32.2 bits (16), Expect = 1.6
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 784 tgtccagatgtgtaagaacaaatt 807
|||||||||||| ||||| |||||
Sbjct: 121 tgtccagatgtggaagaataaatt 144
>gb|AF033097.1|AF033097 Avena sativa nonphototropic hypocotyl 1 (NPH1-2) mRNA, complete cds
Length = 3422
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1418 accacccattccttcc 1433
||||||||||||||||
Sbjct: 2289 accacccattccttcc 2304
>gb|AY847062.1| Avena sativa Aux/IAA1 mRNA, partial cds
Length = 552
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 451 tctcgtcgtcctcctc 466
||||||||||||||||
Sbjct: 171 tctcgtcgtcctcctc 156
>gb|CK780276.1|CK780276 umn498 UMN cDNA from oat Avena sativa cDNA clone JMT4_G11 5', mRNA
sequence
Length = 396
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1103 ctgctgcatctgctg 1117
|||||||||||||||
Sbjct: 153 ctgctgcatctgctg 139
>gb|CN814761.1|CN814761 HRO4502_B12_C24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B12_C24, mRNA sequence
Length = 421
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 49 ttccaagcttgttga 63
|||||||||||||||
Sbjct: 251 ttccaagcttgttga 265
>gb|CN816384.1|CN816384 HRO4520_B03_D06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_B03_D06, mRNA sequence
Length = 800
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1375 aaaatgatgagaaaa 1389
|||||||||||||||
Sbjct: 11 aaaatgatgagaaaa 25
>gb|CN816719.1|CN816719 HRO4524_A03_B06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_A03_B06, mRNA sequence
Length = 485
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1616 gaggatctcatagta 1630
|||||||||||||||
Sbjct: 26 gaggatctcatagta 12
>gb|CN816941.1|CN816941 HRO4526_E03_I06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_E03_I06, mRNA sequence
Length = 493
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1687 cggtgccgccgccgc 1701
|||||||||||||||
Sbjct: 31 cggtgccgccgccgc 45
>gb|CN817521.1|CN817521 HRO4458_F03_L06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_F03_L06, mRNA sequence
Length = 775
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1465 tctcacgtttctctg 1479
|||||||||||||||
Sbjct: 274 tctcacgtttctctg 288
>gb|CN817674.1|CN817674 HRO4461_H05_P09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_H05_P09, mRNA sequence
Length = 466
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1421 acccattccttcctt 1435
|||||||||||||||
Sbjct: 77 acccattccttcctt 91
>gb|CN818002.1|CN818002 HRO4456_D05_G10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_D05_G10, mRNA sequence
Length = 340
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 274 gcagcaaaaaaggat 288
|||||||||||||||
Sbjct: 279 gcagcaaaaaaggat 265
>gb|CN818505.1|CN818505 HRO4458_A01_B02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_A01_B02, mRNA sequence
Length = 600
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 829 tcagagacaaggtgt 843
|||||||||||||||
Sbjct: 459 tcagagacaaggtgt 473
>gb|CN818748.1|CN818748 HRO4468_C02_E04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_C02_E04, mRNA sequence
Length = 685
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 936 gcttcatcagcttca 950
|||||||||||||||
Sbjct: 450 gcttcatcagcttca 436
>gb|CN818853.1|CN818853 HRO4473_F02_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_F02_XXX, mRNA sequence
Length = 762
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 272 ttgcagcaaaaaagg 286
|||||||||||||||
Sbjct: 33 ttgcagcaaaaaagg 19
>gb|CN819203.1|CN819203 HRO4451_C12_E23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_C12_E23, mRNA sequence
Length = 511
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 274 gcagcaaaaaaggat 288
|||||||||||||||
Sbjct: 432 gcagcaaaaaaggat 418
>gb|CN819424.1|CN819424 HRO4405_H04_O07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_H04_O07, mRNA
sequence
Length = 574
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1346 tccaccacctcctcc 1360
|||||||||||||||
Sbjct: 55 tccaccacctcctcc 41
>gb|CN820345.1|CN820345 HRO4418_C10_E20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_C10_E20, mRNA
sequence
Length = 278
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1346 tccaccacctcctcc 1360
|||||||||||||||
Sbjct: 81 tccaccacctcctcc 67
>gb|CN820375.1|CN820375 HRO4418_F07_K14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_F07_K14, mRNA
sequence
Length = 695
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 936 gcttcatcagcttca 950
|||||||||||||||
Sbjct: 490 gcttcatcagcttca 476
>gb|CN820601.1|CN820601 HRO4415_C11_F21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_C11_F21, mRNA
sequence
Length = 790
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 274 gcagcaaaaaaggat 288
|||||||||||||||
Sbjct: 673 gcagcaaaaaaggat 659
>gb|CN820630.1|CN820630 HRO4415_F04_L07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_F04_L07, mRNA
sequence
Length = 510
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 656 gaaatgaatgtacag 670
|||||||||||||||
Sbjct: 452 gaaatgaatgtacag 438
>gb|CN820659.1|CN820659 HRO4415_H10_P19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_H10_P19, mRNA
sequence
Length = 710
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 atcaggccattccaa 54
|||||||||||||||
Sbjct: 440 atcaggccattccaa 454
>gb|CN821445.1|CN821445 HRO4425_D08_G15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_D08_G15, mRNA
sequence
Length = 532
Score = 30.2 bits (15), Expect = 6.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 1320 ctcctttgccttcttcccc 1338
|||||| ||||||||||||
Sbjct: 262 ctccttggccttcttcccc 244
>gb|CN821555.1|CN821555 HRO4426_F07_K14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_F07_K14, mRNA
sequence
Length = 513
Score = 30.2 bits (15), Expect = 6.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 452 ctcgtcgtcctcctc 466
|||||||||||||||
Sbjct: 313 ctcgtcgtcctcctc 299
>gb|CN821594.1|CN821594 HRO4408_A12_B24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_A12_B24, mRNA
sequence
Length = 721
Score = 30.2 bits (15), Expect = 6.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 1220 cttggagcagatgacattg 1238
|||||||||||||| ||||
Sbjct: 306 cttggagcagatgaaattg 288
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5109
Number of Sequences: 8143
Number of extensions: 5109
Number of successful extensions: 1435
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1391
Number of HSP's gapped (non-prelim): 43
length of query: 1723
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1706
effective length of database: 4,564,032
effective search space: 7786238592
effective search space used: 7786238592
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)