BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192958.2.1
(1629 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN180781.1|CN180781 As03_isu1961_C ISU cDNA from oat Ave... 371 e-102
gb|CN820308.1|CN820308 HRO4417_H07_O13ZS5 Lib AA069E1X Aven... 38 0.024
gb|CN817917.1|CN817917 HRO4462_B10_D20ZS5 Lib AA070E1X Aven... 36 0.095
dbj|AB059557.2| Avena sativa MIP mRNA for myo-inositol-1-ph... 36 0.095
gb|CN817274.1|CN817274 HRO4458_D09_H18ZS5 Lib AA070E1X Aven... 34 0.37
gb|CN818002.1|CN818002 HRO4456_D05_G10ZS5 Lib AA070E1X Aven... 34 0.37
gb|CN818044.1|CN818044 HRO4472_D08_G16ZS5 Lib AA070E1X Aven... 34 0.37
gb|CN818049.1|CN818049 HRO4472_C07_E14ZS5 Lib AA070E1X Aven... 34 0.37
gb|CN819203.1|CN819203 HRO4451_C12_E23ZS5 Lib AA070E1X Aven... 34 0.37
gb|CN820601.1|CN820601 HRO4415_C11_F21ZS5 Lib AA069E1X Aven... 34 0.37
gb|CN821590.1|CN821590 HRO4408_A08_B16ZS5 Lib AA069E1X Aven... 34 0.37
>gb|CN180781.1|CN180781 As03_isu1961_C ISU cDNA from oat Avena sativa cDNA clone
As03_isu1961, mRNA sequence
Length = 1004
Score = 371 bits (187), Expect = e-102
Identities = 449/535 (83%), Gaps = 6/535 (1%)
Strand = Plus / Plus
Query: 336 cctactgctgggcgcactgcaccctctg---cccaccgcctggcacatcatcatcctcgt 392
||||||||||||| |||||||| | ||| ||||| ||||||| || || ||||| |
Sbjct: 134 cctactgctgggcacactgcacacgctggccaccaccacctggcatgtcctcgtcctcat 193
Query: 393 cgtaggcctcctgg---tggtgctgctgccgcctccgcatctcctcttcgatgttcacgt 449
| |||||||||||| || || ||||||||||||| ||||||||| ||||||| | ||
Sbjct: 194 cataggcctcctgggcctgctgttgctgccgcctcctcatctcctcctcgatgtcaatgt 253
Query: 450 cgtacgtcattgtctcctcgcactcgtctagctccatgtcagtgtactgtgatactggct 509
| |||| ||| |||||||| ||||| |||||||||||||| |||||||| || || ||||
Sbjct: 254 catacgccatagtctcctcacactcatctagctccatgtccgtgtactgcgacacgggct 313
Query: 510 tgggcgggagaacaacctccagggccttgcactgctccgggctcaacgagtccgggaact 569
||||||| || ||| ||| |||||||||||||| |||||| ||| |||||||||||| |
Sbjct: 314 tgggcggcaggacagtctctagggccttgcactggtccgggttcagcgagtccgggaagt 373
Query: 570 ccaccgaaaagtgaatgtacagcttgcccttcatgaagggcctctgatacatgggcatgc 629
|||||| ||||| ||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct: 374 ccaccgtgaagtggatgtagagcttgcccttcatgaacggcctctggtacatgggcatgc 433
Query: 630 cttcatcgttgattgccttgaaagaatcaggcttcacaacttcaccagggttcgatttga 689
| || |||||||| |||||||| || |||||||| |||||||| ||||| || || ||||
Sbjct: 434 cctcgtcgttgatcgccttgaacgagtcaggcttaacaacttccccaggattggacttga 493
Query: 690 tcagcagctgcctgttatccaagtgagtcagaacaaactggaagccacacagagattcag 749
| |||||||||||| ||||| ||||| |||||| | |||||||||||||| | |||||
Sbjct: 494 tgagcagctgcctgccgtccaaatgagtaagaacatattggaagccacacagggcttcag 553
Query: 750 tcaaggtcagtgtgtgctcgtagaagaggtcatcgccctttctcttgaacttgggatgct 809
| | |||||| |||||||| ||||||||||| |||||||| | |||||||||||||||||
Sbjct: 554 tgagggtcagagtgtgctcatagaagaggtcgtcgcccttccgcttgaacttgggatgct 613
Query: 810 ccttctgctggagaacaaagatgatatctccagtggtagtatcaggtgcttcatc 864
|||||||||| || || ||||| || || ||||| |||||||| ||||||||
Sbjct: 614 ccttctgctgtaggacgaagattatgtccccagtaacggtatcaggcgcttcatc 668
Score = 240 bits (121), Expect = 3e-063
Identities = 286/341 (83%)
Strand = Plus / Plus
Query: 890 gcttcatcagcttcgccagggaatgtgatcttctgcccgttctgcatacctttctcaact 949
|||||||| || ||||||||||| ||||||||||| | || ||||||||| ||||| ||
Sbjct: 661 gcttcatcggcctcgccagggaaggtgatcttctggctgtgctgcatacccttctcgacc 720
Query: 950 accacttcaagaactttcttctccggcacaactttatcacctttgcattgtgggcatcta 1009
|| || || ||||| |||||||| ||||||| || || || ||||| || ||||||
Sbjct: 721 actacctccagaaccttcttctcttgcacaaccttctcgcccttgcactgcccacatcta 780
Query: 1010 tccttatcgctgatggtctctccagaacccttgcactcattgcaaggatgctgcatttgc 1069
||||| |||||||||||||| |||| ||| |||||||||||||||| ||||||||||||
Sbjct: 781 tccttgtcgctgatggtctcaccagttcccctgcactcattgcaaggttgctgcatttgc 840
Query: 1070 tgaatcattccaggccccaactgccggatttggaccttaaagccagaaccttggcaacca 1129
||||||||||| || |||||||| || |||||||||||| | || | || ||||||||
Sbjct: 841 tgaatcattcctggtcccaactggcgtatttggaccttataaccggctccctggcaaccg 900
Query: 1130 gcacacctcgatgaagctccagactttgaacccttaccattgcacttggagcagagaaca 1189
|||||| || ||||| ||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct: 901 gcacacttcatcgaagccccagactttgagcccttgccattgcactttgagcagagcaca 960
Query: 1190 ctgcgggacagagagagcttctttgatgtgccattgtacaa 1230
|||| || ||||| |||||||| |||||||||||||||||
Sbjct: 961 ttgcgtgaaagagaaagcttcttagatgtgccattgtacaa 1001
>gb|CN820308.1|CN820308 HRO4417_H07_O13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_H07_O13, mRNA
sequence
Length = 767
Score = 38.2 bits (19), Expect = 0.024
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 429 tctcctcttcgatgttcac 447
|||||||||||||||||||
Sbjct: 677 tctcctcttcgatgttcac 659
>gb|CN817917.1|CN817917 HRO4462_B10_D20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_B10_D20, mRNA sequence
Length = 822
Score = 36.2 bits (18), Expect = 0.095
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1467 gctccttgaacttctcgg 1484
||||||||||||||||||
Sbjct: 502 gctccttgaacttctcgg 485
>dbj|AB059557.2| Avena sativa MIP mRNA for myo-inositol-1-phosphate synthase,
complete cds
Length = 1936
Score = 36.2 bits (18), Expect = 0.095
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 944 tcaactaccacttcaaga 961
||||||||||||||||||
Sbjct: 207 tcaactaccacttcaaga 224
>gb|CN817274.1|CN817274 HRO4458_D09_H18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4458_D09_H18, mRNA sequence
Length = 542
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 643 tgccttgaaagaatcag 659
|||||||||||||||||
Sbjct: 41 tgccttgaaagaatcag 25
>gb|CN818002.1|CN818002 HRO4456_D05_G10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_D05_G10, mRNA sequence
Length = 340
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 890 gcttcatcagcttcgcc 906
|||||||||||||||||
Sbjct: 25 gcttcatcagcttcgcc 9
>gb|CN818044.1|CN818044 HRO4472_D08_G16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_D08_G16, mRNA sequence
Length = 842
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 643 tgccttgaaagaatcag 659
|||||||||||||||||
Sbjct: 213 tgccttgaaagaatcag 197
>gb|CN818049.1|CN818049 HRO4472_C07_E14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_C07_E14, mRNA sequence
Length = 791
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1468 ctccttgaacttctcgg 1484
|||||||||||||||||
Sbjct: 451 ctccttgaacttctcgg 435
>gb|CN819203.1|CN819203 HRO4451_C12_E23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_C12_E23, mRNA sequence
Length = 511
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 857 gcttcatcagcttcgca 873
|||||||||||||||||
Sbjct: 178 gcttcatcagcttcgca 162
>gb|CN820601.1|CN820601 HRO4415_C11_F21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_C11_F21, mRNA
sequence
Length = 790
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 857 gcttcatcagcttcgca 873
|||||||||||||||||
Sbjct: 419 gcttcatcagcttcgca 403
>gb|CN821590.1|CN821590 HRO4408_A08_B16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_A08_B16, mRNA
sequence
Length = 654
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1468 ctccttgaacttctcgg 1484
|||||||||||||||||
Sbjct: 371 ctccttgaacttctcgg 355
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4675
Number of Sequences: 8143
Number of extensions: 4675
Number of successful extensions: 1277
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 23
length of query: 1629
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1612
effective length of database: 4,564,032
effective search space: 7357219584
effective search space used: 7357219584
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)