BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192890.2.1
(531 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819729.1|CN819729 HRO4403_D11_H21ZS5 Lib AA069E1X Aven... 105 4e-023
gb|CN815212.1|CN815212 HRO4507_B05_D09ZS5 Lib AA071E1X Aven... 32 0.47
gb|CN819614.1|CN819614 HRO4402_B10_C20ZS5 Lib AA069E1X Aven... 32 0.47
>gb|CN819729.1|CN819729 HRO4403_D11_H21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_D11_H21, mRNA
sequence
Length = 451
Score = 105 bits (53), Expect = 4e-023
Identities = 104/121 (85%)
Strand = Plus / Plus
Query: 86 cggcggtggagaagctcaaggtcctctgggactcgcaggtcaacgacgaggagcagtggg 145
||||| |||||||| |||||| |||||||||||||| | || |||||||| | ||||
Sbjct: 52 cggcgttggagaagatcaaggcgttctgggactcgcagtaccacaacgaggagaactggg 111
Query: 146 cgctcaattataagctgctgaaggctgctggtctgtttgcgggatccatcttcctgatgc 205
||||||| |||||| | || |||||||||||| ||||||| |||||||||||||||||||
Sbjct: 112 cgctcaactataagatcctaaaggctgctggtttgtttgctggatccatcttcctgatgc 171
Query: 206 g 206
|
Sbjct: 172 g 172
>gb|CN815212.1|CN815212 HRO4507_B05_D09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_B05_D09, mRNA sequence
Length = 213
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 122 aggtcaacgacgagga 137
||||||||||||||||
Sbjct: 172 aggtcaacgacgagga 187
>gb|CN819614.1|CN819614 HRO4402_B10_C20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_B10_C20, mRNA
sequence
Length = 770
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 49 aaccctcgaggaaggc 64
||||||||||||||||
Sbjct: 219 aaccctcgaggaaggc 204
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1210
Number of Sequences: 8143
Number of extensions: 1210
Number of successful extensions: 332
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 4
length of query: 531
length of database: 4,702,463
effective HSP length: 16
effective length of query: 515
effective length of database: 4,572,175
effective search space: 2354670125
effective search space used: 2354670125
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)