BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2192481.2.2
         (1053 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN815174.1|CN815174  HRO4506_F11_K22ZS5 Lib AA071E1X Aven...    34   0.24 
gb|CN820733.1|CN820733  HRO4414_A04_A08ZS5 Lib AA069E1X Aven...    34   0.24 

>gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4506_F11_K22, mRNA sequence
          Length = 584

 Score = 34.2 bits (17), Expect = 0.24
 Identities = 23/25 (92%)
 Strand = Plus / Minus

                                    
Query: 936 cggcggtggtggccgccgccgccgc 960
           ||||| |||| ||||||||||||||
Sbjct: 295 cggcgctggtagccgccgccgccgc 271



>gb|CN820733.1|CN820733 HRO4414_A04_A08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4414_A04_A08, mRNA
           sequence
          Length = 433

 Score = 34.2 bits (17), Expect = 0.24
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 943 ggtggccgccgccgccg 959
           |||||||||||||||||
Sbjct: 23  ggtggccgccgccgccg 39



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2465
Number of Sequences: 8143
Number of extensions: 2465
Number of successful extensions: 883
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 876
Number of HSP's gapped (non-prelim): 7
length of query: 1053
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1037
effective length of database: 4,572,175
effective search space: 4741345475
effective search space used: 4741345475
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)