BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161284.2.6
(621 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815851.1|CN815851 HRO4511_B11_D21ZS5 Lib AA071E1X Aven... 250 1e-066
gb|CN818151.1|CN818151 HRO4471_D03_G05ZS5 Lib AA070E1X Aven... 190 1e-048
gb|BE439229.1|BE439229 CDO1436_WHE03E06R ITEC CDO Oat cDNA ... 143 2e-034
>gb|CN815851.1|CN815851 HRO4511_B11_D21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_B11_D21, mRNA sequence
Length = 419
Score = 250 bits (126), Expect = 1e-066
Identities = 198/222 (89%)
Strand = Plus / Minus
Query: 261 tccagtgcctcgatcattacaacactgtttcccctgataaccaccattccaatatctgtt 320
||||||||||| ||||| ||||| ||||||||||||| |||||||||||||||||| ||
Sbjct: 256 tccagtgcctcaatcatgacaacgctgtttcccctgacaaccaccattccaatatcagtc 197
Query: 321 ttgtcatttccattgacctccacagtgttgtccaccaccagattcatgaactggtcgaac 380
|| |||| |||||||||||||| |||||||||||||||||| |||| ||||| || ||
Sbjct: 196 ttctcatccccattgacctccacggtgttgtccaccaccagaatcataaactgatcaaat 137
Query: 381 ccacgaagtgtgccgataacaacacggtttgcattcatcttaatctgaagcttcttgtcc 440
|| || || ||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 136 cctcgtagggtgccaataacaacacggtttgcattcatcttgatctgtagcttcttgtcc 77
Query: 441 atgtacttcttgagatccggaggctgccccgagcggctcatg 482
|||||||||||||||||||||||||| || || |||||||||
Sbjct: 76 atgtacttcttgagatccggaggctggccagatcggctcatg 35
>gb|CN818151.1|CN818151 HRO4471_D03_G05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_D03_G05, mRNA sequence
Length = 547
Score = 190 bits (96), Expect = 1e-048
Identities = 144/160 (90%)
Strand = Plus / Minus
Query: 324 tcatttccattgacctccacagtgttgtccaccaccagattcatgaactggtcgaaccca 383
|||| ||||||||||||||||||||||||||| || | |||||||||||| ||||||||
Sbjct: 235 tcatctccattgacctccacagtgttgtccacaactaaattcatgaactgatcgaaccct 176
Query: 384 cgaagtgtgccgataacaacacggtttgcattcatcttaatctgaagcttcttgtccatg 443
||||| ||||| || ||||||||||||||||||| ||| ||||| ||||| |||||||||
Sbjct: 175 cgaagcgtgccaatgacaacacggtttgcattcagcttgatctgtagctttttgtccatg 116
Query: 444 tacttcttgagatccggaggctgccccgagcggctcatgg 483
|||||||| |||||||| ||||||||||| ||||||||||
Sbjct: 115 tacttcttcagatccggcggctgccccgatcggctcatgg 76
>gb|BE439229.1|BE439229 CDO1436_WHE03E06R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1436_WHE03E06, mRNA sequence
Length = 234
Score = 143 bits (72), Expect = 2e-034
Identities = 114/128 (89%)
Strand = Plus / Minus
Query: 324 tcatttccattgacctccacagtgttgtccaccaccagattcatgaactggtcgaaccca 383
|||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct: 218 tcatctccattgacctccacagtgttgtccacaaccaaattcatgaactggtcgaatcct 159
Query: 384 cgaagtgtgccgataacaacacggtttgcattcatcttaatctgaagcttcttgtccatg 443
||||| || || || |||||||||||||| |||| ||| ||||| ||||| |||||||||
Sbjct: 158 cgaagcgtaccaatgacaacacggtttgcgttcagcttgatctgtagctttttgtccatg 99
Query: 444 tacttctt 451
||||||||
Sbjct: 98 tacttctt 91
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1268
Number of Sequences: 8143
Number of extensions: 1268
Number of successful extensions: 353
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 3
length of query: 621
length of database: 4,702,463
effective HSP length: 16
effective length of query: 605
effective length of database: 4,572,175
effective search space: 2766165875
effective search space used: 2766165875
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)