BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.28
(3878 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Aven... 123 1e-027
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 88 7e-017
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 84 1e-015
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 82 4e-015
gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Aven... 44 0.001
gb|CN819768.1|CN819768 HRO4403_H04_P07ZS5 Lib AA069E1X Aven... 38 0.057
gb|CN820162.1|CN820162 HRO4411_H04_P07ZS5 Lib AA069E1X Aven... 36 0.23
>gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A01_A02, mRNA sequence
Length = 474
Score = 123 bits (62), Expect = 1e-027
Identities = 119/138 (86%)
Strand = Plus / Minus
Query: 706 gcaaggaaagggtcgatccggacccaaagcagcgagaagatcgaagccaggaggatggac 765
|||||||| |||| || || |||||||| ||||||| ||| || ||||||||||| |||
Sbjct: 148 gcaaggaaggggttgacgcgcacccaaaggagcgagatgatggaggccaggaggattgac 89
Query: 766 cagacaatgacaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaacggg 825
||||| ||||| ||||| || |||||||||||||| |||| ||||||||||||||| |||
Sbjct: 88 cagacgatgacgatcgtcggggtcctgttctgccttccaagcagacccttgaggaatggg 29
Query: 826 taaagatggacgatcacc 843
|| |||||||| ||||||
Sbjct: 28 tagagatggacaatcacc 11
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 87.7 bits (44), Expect = 7e-017
Identities = 122/148 (82%)
Strand = Plus / Minus
Query: 739 gagaagatcgaagccaggaggatggaccagacaatgacaatcgttggcgtcctgttctgc 798
|||||||||||||| |||||||| | |||||| ||||||||||| || || | ||| |
Sbjct: 248 gagaagatcgaagcgaggaggatagcccagacgatgacaatcgtcggtgtgcggtttgtc 189
Query: 799 ctcccaaccagacccttgaggaacgggtaaagatggacgatcacccaaaatgcaaagaag 858
|| || | |||||||||||||| ||||| | || || |||||||| || |||||||||
Sbjct: 188 ctgcccataagacccttgaggaatgggtataagtgaacaatcacccagaaggcaaagaag 129
Query: 859 agcttcccgaacagggggccccatgatt 886
||||| |||||||| || ||||||||||
Sbjct: 128 agctttccgaacagcggcccccatgatt 101
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 83.8 bits (42), Expect = 1e-015
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 811 cccttgaggaacgggtaaagatggacgatcacccaaaatgcaaagaagagcttcccgaac 870
||||||||||| ||||| || |||||||| ||||| || | ||||||||||||||||||
Sbjct: 183 cccttgaggaatgggtagaggtggacgatgacccagaaggaaaagaagagcttcccgaag 124
Query: 871 agggggccccatga 884
||||||||||||||
Sbjct: 123 agggggccccatga 110
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 81.8 bits (41), Expect = 4e-015
Identities = 137/169 (81%)
Strand = Plus / Minus
Query: 718 tcgatccggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgaca 777
||||| || ||||| |||| |||||||||||||| |||||||| | |||||| |||||
Sbjct: 180 tcgatacgaacccacagcaaggagaagatcgaagcgaggaggatagcccagacgatgacg 121
Query: 778 atcgttggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacg 837
||||| || || | ||| ||| || | |||||||||||||||||||| | || ||
Sbjct: 120 atcgtcggtgtgcggtttgtcctgcccataagacccttgaggaacgggtataagtgaaca 61
Query: 838 atcacccaaaatgcaaagaagagcttcccgaacagggggccccatgatt 886
|||||||| || |||||||||||||| ||||| || || ||||||||||
Sbjct: 60 atcacccagaaggcaaagaagagctttccgaagagcggcccccatgatt 12
>gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_C10_F19, mRNA sequence
Length = 515
Score = 44.1 bits (22), Expect = 0.001
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 739 gagaagatcgaagccaggaggatggaccagacaatgac 776
|||||||||||||| |||||||| | |||||| |||||
Sbjct: 48 gagaagatcgaagcgaggaggatagcccagacgatgac 11
>gb|CN819768.1|CN819768 HRO4403_H04_P07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_H04_P07, mRNA
sequence
Length = 334
Score = 38.2 bits (19), Expect = 0.057
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 422 aactgcacaaggttgccgc 440
|||||||||||||||||||
Sbjct: 280 aactgcacaaggttgccgc 262
>gb|CN820162.1|CN820162 HRO4411_H04_P07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_H04_P07, mRNA
sequence
Length = 457
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2354 ttgaaacataaaccaatc 2371
||||||||||||||||||
Sbjct: 311 ttgaaacataaaccaatc 294
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,074
Number of Sequences: 8143
Number of extensions: 11074
Number of successful extensions: 2882
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2866
Number of HSP's gapped (non-prelim): 16
length of query: 3878
length of database: 4,702,463
effective HSP length: 17
effective length of query: 3861
effective length of database: 4,564,032
effective search space: 17621727552
effective search space used: 17621727552
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)