BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.21
(693 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta... 121 9e-028
emb|X78433.1|ASLBDG A.sativa L. mRNA for beta-D-glucosidase 98 1e-020
gb|CN819927.1|CN819927 HRO4407_H12_P23ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN820252.1|CN820252 HRO4417_C06_E11ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN820938.1|CN820938 HRO4421_F11_K21ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN821151.1|CN821151 HRO4428_A10_B20ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN821463.1|CN821463 HRO4425_F05_K09ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN821540.1|CN821540 HRO4426_E01_I02ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN819567.1|CN819567 HRO4401_F08_K15ZS5 Lib AA069E1X Aven... 42 6e-004
gb|CN819479.1|CN819479 HRO4406_E06_I12ZS5 Lib AA069E1X Aven... 40 0.003
gb|CN820578.1|CN820578 HRO4415_A09_B17ZS5 Lib AA069E1X Aven... 40 0.003
gb|CN819387.1|CN819387 HRO4405_D06_G11ZS5 Lib AA069E1X Aven... 38 0.010
>gb|AF082991.1|AF082991 Avena sativa beta-D-glucosidase beta subunit precursor (P60b) mRNA,
complete cds
Length = 1923
Score = 121 bits (61), Expect = 9e-028
Identities = 154/185 (83%)
Strand = Plus / Plus
Query: 24 ttgaaagagaacggcatagaaccatatgtgacacttttccactgggacacacctcaagcg 83
|||| ||||||||||||| | |||||| | || ||||||||||||||||| ||||||||
Sbjct: 544 ttgatagagaacggcataaagccatatattacgcttttccactgggacacccctcaagca 603
Query: 84 ctggtggacagctacggtggcttcttagatgacaggattgtaaaagattacacggacttt 143
|||| |||| ||| | |||||||||| |||||||||||||||||||| ||||
Sbjct: 604 ctggcagacaagtacaacgacttcttagataggaggattgtaaaagattacacagactac 663
Query: 144 gccaaggtgtgctttgtgcacttcggcgacgtcgtgaagaactggttcaccttcaacgag 203
|| | ||||||||||| ||||||||||||| |||||||| ||| ||||||| ||||||
Sbjct: 664 gcgacggtgtgctttgagcacttcggcgacaaggtgaagaattggatcacctttaacgag 723
Query: 204 ccaca 208
|||||
Sbjct: 724 ccaca 728
Score = 65.9 bits (33), Expect = 4e-011
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 307 agccatacattgttgcccacaacctcctccgagctcacgctgagactgt 355
||||||||||||||| |||||||||||||| ||| || |||||||||||
Sbjct: 827 agccatacattgttggccacaacctcctcctagcacatgctgagactgt 875
Score = 40.1 bits (20), Expect = 0.003
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 618 gggataaactactacacctcgaggttttccaagcacatcgacat 661
||||| |||||||||||| | ||||||||| |||| || |||||
Sbjct: 1135 gggatcaactactacaccgctaggttttccgagcatattgacat 1178
>emb|X78433.1|ASLBDG A.sativa L. mRNA for beta-D-glucosidase
Length = 1898
Score = 97.6 bits (49), Expect = 1e-020
Identities = 91/105 (86%)
Strand = Plus / Plus
Query: 104 cttcttagatgacaggattgtaaaagattacacggactttgccaaggtgtgctttgtgca 163
|||||||||| |||||||||||||||||||| |||| || | ||||||||||| ||
Sbjct: 618 cttcttagataggaggattgtaaaagattacacagactacgcgacggtgtgctttgaaca 677
Query: 164 cttcggcgacgtcgtgaagaactggttcaccttcaacgagccaca 208
|||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 678 cttcggcgacaaggtgaagaactggttcacctttaacgagccaca 722
Score = 54.0 bits (27), Expect = 2e-007
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 309 ccatacattgttgcccacaacctcctccgagctcacgctgagactgt 355
||||||||||||| |||||||||||||| ||| || || ||||||||
Sbjct: 826 ccatacattgttggccacaacctcctcctagcacatgccgagactgt 872
Score = 54.0 bits (27), Expect = 2e-007
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 24 ttgaaagagaacggcatagaaccatatgtgacacttttccactgggacacacctcaagc 82
|||| ||||||||| ||| | |||||| | || ||||||||||||||||| ||||||||
Sbjct: 538 ttgatagagaacggtataaagccatatattacgcttttccactgggacacccctcaagc 596
Score = 40.1 bits (20), Expect = 0.003
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 618 gggataaactactacacctcgaggttttccaagcacatcgacat 661
||||| ||||||||||| || |||||| ||||||| || |||||
Sbjct: 1132 gggatcaactactacacttctaggtttgccaagcatattgacat 1175
>gb|CN819927.1|CN819927 HRO4407_H12_P23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_H12_P23, mRNA
sequence
Length = 832
Score = 44.1 bits (22), Expect = 2e-004
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 492 ggatggttcatggagccggtagttcgcggcgactaccctttctccatgagatca 545
||||||||| | ||||| | ||||| || |||||||||||||| |||||||||
Sbjct: 176 ggatggttcctagagccaatggttcgtggtgactaccctttctctatgagatca 229
Score = 38.2 bits (19), Expect = 0.010
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 618 gggataaactactacacctcgaggttttccaagca 652
||||| ||||||||||| || |||||| |||||||
Sbjct: 302 gggatcaactactacacttctaggtttgccaagca 336
>gb|CN820252.1|CN820252 HRO4417_C06_E11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_C06_E11, mRNA
sequence
Length = 544
Score = 44.1 bits (22), Expect = 2e-004
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 492 ggatggttcatggagccggtagttcgcggcgactaccctttctccatgagatca 545
||||||||| | ||||| | ||||| || |||||||||||||| |||||||||
Sbjct: 28 ggatggttcctagagccaatggttcgtggtgactaccctttctctatgagatca 81
Score = 38.2 bits (19), Expect = 0.010
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 618 gggataaactactacacctcgaggttttccaagca 652
||||| ||||||||||| || |||||| |||||||
Sbjct: 154 gggatcaactactacacttctaggtttgccaagca 188
>gb|CN820938.1|CN820938 HRO4421_F11_K21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_F11_K21, mRNA
sequence
Length = 808
Score = 44.1 bits (22), Expect = 2e-004
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 492 ggatggttcatggagccggtagttcgcggcgactaccctttctccatgagatca 545
||||||||| | ||||| | ||||| || |||||||||||||| |||||||||
Sbjct: 51 ggatggttcctagagccaatggttcgtggtgactaccctttctctatgagatca 104
Score = 38.2 bits (19), Expect = 0.010
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 618 gggataaactactacacctcgaggttttccaagca 652
||||| ||||||||||| || |||||| |||||||
Sbjct: 177 gggatcaactactacacttctaggtttgccaagca 211
>gb|CN821151.1|CN821151 HRO4428_A10_B20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_A10_B20, mRNA
sequence
Length = 826
Score = 44.1 bits (22), Expect = 2e-004
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 492 ggatggttcatggagccggtagttcgcggcgactaccctttctccatgagatca 545
||||||||| | ||||| | ||||| || |||||||||||||| |||||||||
Sbjct: 56 ggatggttcctagagccaatggttcgtggtgactaccctttctctatgagatca 109
Score = 38.2 bits (19), Expect = 0.010
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 618 gggataaactactacacctcgaggttttccaagca 652
||||| ||||||||||| || |||||| |||||||
Sbjct: 182 gggatcaactactacacttctaggtttgccaagca 216
>gb|CN821463.1|CN821463 HRO4425_F05_K09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_F05_K09, mRNA
sequence
Length = 812
Score = 44.1 bits (22), Expect = 2e-004
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 492 ggatggttcatggagccggtagttcgcggcgactaccctttctccatgagatca 545
||||||||| | ||||| | ||||| || |||||||||||||| |||||||||
Sbjct: 174 ggatggttcctagagccaatggttcgtggtgactaccctttctctatgagatca 227
Score = 38.2 bits (19), Expect = 0.010
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 618 gggataaactactacacctcgaggttttccaagca 652
||||| ||||||||||| || |||||| |||||||
Sbjct: 300 gggatcaactactacacttctaggtttgccaagca 334
Score = 34.2 bits (17), Expect = 0.16
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 323 ccacaacctcctccgagctcacgctgagactgt 355
|||||||||||||| ||| || || ||||||||
Sbjct: 8 ccacaacctcctcctagcacatgccgagactgt 40
>gb|CN821540.1|CN821540 HRO4426_E01_I02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_E01_I02, mRNA
sequence
Length = 612
Score = 44.1 bits (22), Expect = 2e-004
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 492 ggatggttcatggagccggtagttcgcggcgactaccctttctccatgagatca 545
||||||||| | ||||| | ||||| || |||||||||||||| |||||||||
Sbjct: 173 ggatggttcctagagccaatggttcgtggtgactaccctttctctatgagatca 226
Score = 38.2 bits (19), Expect = 0.010
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 618 gggataaactactacacctcgaggttttccaagca 652
||||| ||||||||||| || |||||| |||||||
Sbjct: 299 gggatcaactactacacttctaggtttgccaagca 333
>gb|CN819567.1|CN819567 HRO4401_F08_K15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_F08_K15, mRNA
sequence
Length = 869
Score = 42.1 bits (21), Expect = 6e-004
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 513 gttcgcggcgactaccctttctccatgagatca 545
||||| || |||||||||||||| |||||||||
Sbjct: 11 gttcgtggtgactaccctttctctatgagatca 43
Score = 38.2 bits (19), Expect = 0.010
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 618 gggataaactactacacctcgaggttttccaagca 652
||||| ||||||||||| || |||||| |||||||
Sbjct: 116 gggatcaactactacacttctaggtttgccaagca 150
>gb|CN819479.1|CN819479 HRO4406_E06_I12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_E06_I12, mRNA
sequence
Length = 637
Score = 40.1 bits (20), Expect = 0.003
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 618 gggataaactactacacctcgaggttttccaagcacatcgacat 661
||||| ||||||||||| || |||||| ||||||| || |||||
Sbjct: 122 gggatcaactactacacttctaggtttgccaagcatattgacat 165
>gb|CN820578.1|CN820578 HRO4415_A09_B17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_A09_B17, mRNA
sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.003
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 618 gggataaactactacacctcgaggttttccaagcacatcgacat 661
||||| ||||||||||| || |||||| ||||||| || |||||
Sbjct: 691 gggatcaactactacacttctaggtttgccaagcatattgacat 648
>gb|CN819387.1|CN819387 HRO4405_D06_G11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_D06_G11, mRNA
sequence
Length = 798
Score = 38.2 bits (19), Expect = 0.010
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 618 gggataaactactacacctcgaggttttccaagca 652
||||| ||||||||||| || |||||| |||||||
Sbjct: 109 gggatcaactactacacttctaggtttgccaagca 143
Score = 34.2 bits (17), Expect = 0.16
Identities = 30/33 (90%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 513 gttcgcggcgactaccctttctccatgagatca 545
||||| || ||||||||||||| ||||||||||
Sbjct: 6 gttcgtggtgactaccctttct-catgagatca 37
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1463
Number of Sequences: 8143
Number of extensions: 1463
Number of successful extensions: 471
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 46
length of query: 693
length of database: 4,702,463
effective HSP length: 16
effective length of query: 677
effective length of database: 4,572,175
effective search space: 3095362475
effective search space used: 3095362475
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)