BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.1
(845 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821143.1|CN821143 HRO4428_A02_B04ZS5 Lib AA069E1X Aven... 208 6e-054
gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Aven... 192 4e-049
gb|CN819429.1|CN819429 HRO4405_H09_O17ZS5 Lib AA069E1X Aven... 139 5e-033
gb|CN816903.1|CN816903 HRO4526_A11_A22ZS5 Lib AA071E1X Aven... 109 4e-024
gb|CN820338.1|CN820338 HRO4418_C03_E06ZS5 Lib AA069E1X Aven... 50 3e-006
gb|CN815103.1|CN815103 HRO4505_H07_O13ZS5 Lib AA071E1X Aven... 36 0.049
gb|CN815300.1|CN815300 HRO4508_B08_D16ZS5 Lib AA071E1X Aven... 34 0.19
gb|CN819184.1|CN819184 HRO4451_B04_C07ZS5 Lib AA070E1X Aven... 34 0.19
>gb|CN821143.1|CN821143 HRO4428_A02_B04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_A02_B04, mRNA
sequence
Length = 636
Score = 208 bits (105), Expect = 6e-054
Identities = 235/279 (84%)
Strand = Plus / Minus
Query: 458 gatatcagatatagaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctc 517
|||||||| || |||||||||||||||||||| ||||| ||||| ||||| ||||||||
Sbjct: 340 gatatcagctagagaaatcagtgctgcaaccaagccagcatttgctgcaagagtaggctc 281
Query: 518 tgtgtagttgtagttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccac 577
|||||| || ||||| ||||||| ||||||| |||| ||| |||||||||||||||| ||
Sbjct: 280 tgtgtaattatagtttgtgcggatatctttgaagccatcatgcctgtcagggccagcaac 221
Query: 578 cattgctccaacaaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcc 637
||||||||| || ||||| || ||||||||||| || | |||||||||||| |||||||
Sbjct: 220 cattgctccgacgaggatatttgggtttgcctttttagactccctccatttgaaacctcc 161
Query: 638 tttgcatccatacttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgctt 697
||||||||| || | ||| ||||||||||| || || || |||||||| ||| |||||
Sbjct: 160 tttgcatccgtagtggacaccgttatgagggattgacgcccctctgtgatgaacacgctt 101
Query: 698 cgggtacttgtttncgaaacccacancgtagctcatctt 736
|||||||| ||| | |||| ||| | |||||||||||
Sbjct: 100 tgggtacttctttccataaccaacaacatagctcatctt 62
Score = 50.1 bits (25), Expect = 3e-006
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 361 atggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagaga 420
|||||||||| |||||||| || || ||||| || || |||||||| || | || ||||
Sbjct: 440 atggtttccaagctgatggtgggggtggcggagttgggaacattgggggaactgctgaga 381
Query: 421 agatggtgttctt 433
|||||||||||||
Sbjct: 380 agatggtgttctt 368
Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 199 tttatactgatctgtcata 217
|||||||||||||||||||
Sbjct: 581 tttatactgatctgtcata 563
>gb|CN821108.1|CN821108 HRO4427_F02_L03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_F02_L03, mRNA
sequence
Length = 714
Score = 192 bits (97), Expect = 4e-049
Identities = 224/267 (83%)
Strand = Plus / Minus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| || ||
Sbjct: 571 agaaatcagtgctgcaaccaagccagcatttgctgcaagagtaggctctgtgtaattata 512
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
||| ||||||| ||||||| |||| ||| |||||||||||||||| |||||||| || ||
Sbjct: 511 gtttgtgcggatatctttgaagccatcatgcctgtcagggccagcaaccattgccccgac 452
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatttgtaacctcctttgcatccata 649
||||| || ||||||||||| || | |||||||||||| |||||||||||||||| ||
Sbjct: 451 gaggatatttgggtttgcctttttagactccctccatttgaaacctcctttgcatccgta 392
Query: 650 cttgacgccgttatgaggtatcgaggcacctctgtggtgagggcgcttcgggtacttgtt 709
| ||| ||||||||||| || || || |||||||| ||| ||||| |||||||| ||
Sbjct: 391 gtggacaccgttatgagggattgatgcccctctgtgatgaacacgcttggggtacttctt 332
Query: 710 tncgaaacccacancgtagctcatctt 736
| | |||| || |||||||||||||
Sbjct: 331 tccataaccaacgacgtagctcatctt 305
Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 417 gagaagatggtgttctt 433
|||||||||||||||||
Sbjct: 627 gagaagatggtgttctt 611
>gb|CN819429.1|CN819429 HRO4405_H09_O17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_H09_O17, mRNA
sequence
Length = 698
Score = 139 bits (70), Expect = 5e-033
Identities = 136/158 (86%)
Strand = Plus / Minus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| || ||
Sbjct: 175 agaaatcagtgctgcaaccaagccagcatttgctgcaagagtaggctctgtgtaattata 116
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccattgctccaac 589
||| ||||||| ||||||| |||| ||| |||||||||||||||| |||||||| || ||
Sbjct: 115 gtttgtgcggatatctttgaagccatcatgcctgtcagggccagcaaccattgccccgac 56
Query: 590 aaggatgttagggtttgccttcttcgtgtccctccatt 627
||||| || ||||||||||| || | ||||||||||
Sbjct: 55 gaggatatttgggtttgcctttttagactccctccatt 18
Score = 42.1 bits (21), Expect = 8e-004
Identities = 60/73 (82%)
Strand = Plus / Minus
Query: 361 atggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagaga 420
|||||||||| |||||||| || || || || || || |||||||| || | || ||||
Sbjct: 287 atggtttccaagctgatggtgggggtggtggagttgggaacattgggggaacagctgaga 228
Query: 421 agatggtgttctt 433
|||||||||||||
Sbjct: 227 agatggtgttctt 215
Score = 36.2 bits (18), Expect = 0.049
Identities = 46/54 (85%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 164 tgcacacaacttctggtctatgtatgacagaggattttatactgatctgtcata 217
||||||||||||| ||| ||| ||||||| ||||| ||||||||| ||||||
Sbjct: 462 tgcacacaacttccagtccatggttgacagatgattt-atactgatccgtcata 410
>gb|CN816903.1|CN816903 HRO4526_A11_A22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_A11_A22, mRNA sequence
Length = 559
Score = 109 bits (55), Expect = 4e-024
Identities = 97/111 (87%)
Strand = Plus / Plus
Query: 470 agaaatcagtgctgcaaccagaccagcgtttgccgcaagggtaggctctgtgtagttgta 529
|||||||||||||||||||| ||||| ||||| ||||| || ||||||||||| || ||
Sbjct: 449 agaaatcagtgctgcaaccaagccagcatttgctgcaagagtgggctctgtgtaattata 508
Query: 530 gttcgtgcggacatctttgtagccgtcacgcctgtcagggccagccaccat 580
||| ||||||| ||||||| |||| ||| |||||||||||||||| |||||
Sbjct: 509 gtttgtgcggatatctttgaagccatcatgcctgtcagggccagcaaccat 559
Score = 42.1 bits (21), Expect = 8e-004
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 361 atggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagaga 420
|||||||||| |||||||| || || || || || || |||||||| || | || ||||
Sbjct: 337 atggtttccaagctgatggtgggggtggtggagttgggaacattgggggaactgctgaga 396
Query: 421 agatggtgttctt 433
|||||||||||||
Sbjct: 397 agatggtgttctt 409
>gb|CN820338.1|CN820338 HRO4418_C03_E06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_C03_E06, mRNA
sequence
Length = 431
Score = 50.1 bits (25), Expect = 3e-006
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 361 atggtttccatgctgatggcggcggcggcggtgtcggaaacattggagggatcgcagaga 420
|||||||||| |||||||| || || ||||| || || |||||||| || | || ||||
Sbjct: 102 atggtttccaagctgatggtgggggtggcggagttgggaacattgggggaactgctgaga 43
Query: 421 agatggtgttctt 433
|||||||||||||
Sbjct: 42 agatggtgttctt 30
Score = 44.1 bits (22), Expect = 2e-004
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 164 tgcacacaacttctggtctatgtatgacagaggattttatactgatctgtcata 217
||||||||||||| ||| ||| ||||||| ||||| ||||||||||||||||
Sbjct: 277 tgcacacaacttccagtccatggttgacagatgattt-atactgatctgtcata 225
>gb|CN815103.1|CN815103 HRO4505_H07_O13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_H07_O13, mRNA sequence
Length = 449
Score = 36.2 bits (18), Expect = 0.049
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 379 gcggcggcggcggtgtcg 396
||||||||||||||||||
Sbjct: 34 gcggcggcggcggtgtcg 17
>gb|CN815300.1|CN815300 HRO4508_B08_D16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_B08_D16, mRNA sequence
Length = 410
Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 327 tgggggaaaaatatatt 343
|||||||||||||||||
Sbjct: 197 tgggggaaaaatatatt 213
>gb|CN819184.1|CN819184 HRO4451_B04_C07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_B04_C07, mRNA sequence
Length = 420
Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 105 ttcacacatgagcagga 121
|||||||||||||||||
Sbjct: 151 ttcacacatgagcagga 135
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2015
Number of Sequences: 8143
Number of extensions: 2015
Number of successful extensions: 638
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 25
length of query: 845
length of database: 4,702,463
effective HSP length: 16
effective length of query: 829
effective length of database: 4,572,175
effective search space: 3790333075
effective search space used: 3790333075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)