BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805363.2.1
(2856 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 96 2e-019
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 84 8e-016
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 78 5e-014
gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA ... 50 1e-005
gb|CN817571.1|CN817571 HRO4463_F05_K09ZS5 Lib AA070E1X Aven... 34 0.66
gb|CN821519.1|CN821519 HRO4426_C03_E06ZS5 Lib AA069E1X Aven... 34 0.66
gb|CN815843.1|CN815843 HRO4511_B02_D03ZS5 Lib AA071E1X Aven... 32 2.6
gb|CN819792.1|CN819792 HRO4404_B04_D08ZS5 Lib AA069E1X Aven... 32 2.6
gb|CN820656.1|CN820656 HRO4415_H07_P13ZS5 Lib AA069E1X Aven... 32 2.6
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 95.6 bits (48), Expect = 2e-019
Identities = 108/128 (84%)
Strand = Plus / Minus
Query: 495 gacgatggtcggtgtgcggttctgcttccccatgagacccttcaggaaagggtagaggtg 554
||||||||| || |||||||| ||| |||||||||| ||||| ||||| |||||||||||
Sbjct: 220 gacgatggtgggcgtgcggttttgcctccccatgagccccttgaggaatgggtagaggtg 161
Query: 555 gaggatcacccagattgcaaagaacagcttcccgaatagtggaccccatgattggtagcc 614
|| ||| ||||||| | |||||| ||||||||||| || || |||||||| ||||||
Sbjct: 160 gacgatgacccagaaggaaaagaagagcttcccgaagagggggccccatgacccgtagcc 101
Query: 615 actgttga 622
| ||||||
Sbjct: 100 attgttga 93
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 83.8 bits (42), Expect = 8e-016
Identities = 147/182 (80%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || |||| | ||| || ||||| || ||||||
Sbjct: 260 acccacagcaaggagaagatcgaagcgaggaggatagcccagacgatgacaatcgtcggt 201
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| | | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 200 gtgcggtttgtcctgcccataagacccttgaggaatgggtataagtgaacaatcacccag 141
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactgttgatagca 627
| |||||||| ||||| ||||| || || |||||||||||||| ||||||||||| |||
Sbjct: 140 aaggcaaagaagagctttccgaacagcggcccccatgattggtaaccactgttgatggca 81
Query: 628 ta 629
||
Sbjct: 80 ta 79
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 77.8 bits (39), Expect = 5e-014
Identities = 138/171 (80%)
Strand = Plus / Minus
Query: 448 acccacagcagcgagaatatggaagcaagaaggacggaccaaacaatgacgatggtcggt 507
|||||||||| ||||| || ||||| || |||| | ||| || |||||||| ||||||
Sbjct: 171 acccacagcaaggagaagatcgaagcgaggaggatagcccagacgatgacgatcgtcggt 112
Query: 508 gtgcggttctgcttccccatgagacccttcaggaaagggtagaggtggaggatcacccag 567
|||||||| | | ||||| |||||||| ||||| ||||| | ||| | |||||||||
Sbjct: 111 gtgcggtttgtcctgcccataagacccttgaggaacgggtataagtgaacaatcacccag 52
Query: 568 attgcaaagaacagcttcccgaatagtggaccccatgattggtagccactg 618
| |||||||| ||||| ||||| || || |||||||||||||| ||||||
Sbjct: 51 aaggcaaagaagagctttccgaagagcggcccccatgattggtaaccactg 1
>gb|BE439369.1|BE439369 CDO1430_WHE05G09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1430_WHE05G09, mRNA sequence
Length = 177
Score = 50.1 bits (25), Expect = 1e-005
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 1731 atcctgttcccacataaacaggtccttgaatgccatc 1767
|||| |||||||||||||| || ||||||||||||||
Sbjct: 47 atccagttcccacataaactggcccttgaatgccatc 11
>gb|CN817571.1|CN817571 HRO4463_F05_K09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_F05_K09, mRNA sequence
Length = 876
Score = 34.2 bits (17), Expect = 0.66
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1789 aaagaagacaatgttccggtt 1809
||||||| |||||||||||||
Sbjct: 296 aaagaagtcaatgttccggtt 316
>gb|CN821519.1|CN821519 HRO4426_C03_E06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_C03_E06, mRNA
sequence
Length = 498
Score = 34.2 bits (17), Expect = 0.66
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2714 acaagccacaacccata 2730
|||||||||||||||||
Sbjct: 401 acaagccacaacccata 385
>gb|CN815843.1|CN815843 HRO4511_B02_D03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_B02_D03, mRNA sequence
Length = 571
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2219 gcaacaagggcatcga 2234
||||||||||||||||
Sbjct: 101 gcaacaagggcatcga 116
>gb|CN819792.1|CN819792 HRO4404_B04_D08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4404_B04_D08, mRNA
sequence
Length = 245
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 434 aggggtcgatcttcac 449
||||||||||||||||
Sbjct: 62 aggggtcgatcttcac 47
>gb|CN820656.1|CN820656 HRO4415_H07_P13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_H07_P13, mRNA
sequence
Length = 514
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2219 gcaacaagggcatcga 2234
||||||||||||||||
Sbjct: 116 gcaacaagggcatcga 131
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7428
Number of Sequences: 8143
Number of extensions: 7428
Number of successful extensions: 1934
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1923
Number of HSP's gapped (non-prelim): 9
length of query: 2856
length of database: 4,702,463
effective HSP length: 17
effective length of query: 2839
effective length of database: 4,564,032
effective search space: 12957286848
effective search space used: 12957286848
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)