BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805202.2.1
(1139 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Aven... 450 e-126
gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Aven... 450 e-126
gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Aven... 254 2e-067
gb|CN814741.1|CN814741 HRO4502_A04_A08ZS5 Lib AA071E1X Aven... 36 0.066
>gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_B12_C24, mRNA
sequence
Length = 769
Score = 450 bits (227), Expect = e-126
Identities = 464/543 (85%)
Strand = Plus / Minus
Query: 352 gaagaaagggttcacttccctcgcttcagattctagttgaatcctggccctcctttcaac 411
|||||| || ||||| ||||||||||| ||||| || | |||||| |||||||| ||
Sbjct: 599 gaagaatggattcacatccctcgcttcgaattctctttcagccctggctctcctttccac 540
Query: 412 ctctacctcctccagaattgagcgccttgggttcgaactcttaaacttgttaacaagatt 471
|||||||||||||| ||||||||| |||| || ||| ||||||||||||| || |||
Sbjct: 539 ctctacctcctccaaaattgagcgtcttgcatttgaagtcttaaacttgttgaccagagc 480
Query: 472 ctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatcatc 531
|||||| ||||||||||||||||| || ||||| |||||||||||||||||||||| ||
Sbjct: 479 ctcaaatgcttttgatccattttgttctatgtatttctgtgcagctgaaattacatcgtc 420
Query: 532 aggtctacttgattcatccttctttggaatataccagatgtttacaacttgctgatttac 591
||| || ||| || |||||||| |||||||||||||||||||| |||||||| || ||
Sbjct: 419 gggtttatctgaatcttccttcttgggaatataccagatgtttactacttgctggttcac 360
Query: 592 aatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaatac 651
||||||||||| ||||||||||||||| ||||| ||||| |||||||| | ||||| ||
Sbjct: 359 aatcattggccgcacaaaatgctcataaacatgcgcagcaccattgaagtagggcaagac 300
Query: 652 taaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtaccgg 711
|||||||||||||| ||||||||| ||||||||||||| ||||||||||| | ||| |
Sbjct: 299 caaccagcaattgaaaaacagctttccataagaccagaagggaagccattctattactgc 240
Query: 712 agcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattg 771
||||||||| ||||| || ||||||||||| ||||||| ||||||||| |||||||||||
Sbjct: 239 agcaaaggtaagctcaaacagagtgataaacgagtacaacacccagtatgtgagccattg 180
Query: 772 ctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatacgc 831
||||||||| | || |||||||||||| ||||||| |||||| ||||| |||||||| ||
Sbjct: 179 ctgatcatctatagaagattttgtttctattgctcgaacagacgcatatagaggataagc 120
Query: 832 aagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaaga 891
|||||||| | ||||||||||| ||||| | |||| |||||| ||||||||||| ||
Sbjct: 119 gagtgaaactatgggccccgcgagaacatcgaggttgctgaccagcaccttgaggaagga 60
Query: 892 tcc 894
|||
Sbjct: 59 tcc 57
>gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_A05_A10, mRNA
sequence
Length = 839
Score = 450 bits (227), Expect = e-126
Identities = 464/543 (85%)
Strand = Plus / Minus
Query: 352 gaagaaagggttcacttccctcgcttcagattctagttgaatcctggccctcctttcaac 411
|||||| || ||||| ||||||||||| ||||| || | |||||| |||||||| ||
Sbjct: 593 gaagaatggattcacatccctcgcttcgaattctctttcagccctggctctcctttccac 534
Query: 412 ctctacctcctccagaattgagcgccttgggttcgaactcttaaacttgttaacaagatt 471
|||||||||||||| ||||||||| |||| || ||| ||||||||||||| || |||
Sbjct: 533 ctctacctcctccaaaattgagcgtcttgcatttgaagtcttaaacttgttgaccagagc 474
Query: 472 ctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatcatc 531
|||||| ||||||||||||||||| || ||||| |||||||||||||||||||||| ||
Sbjct: 473 ctcaaatgcttttgatccattttgttctatgtatttctgtgcagctgaaattacatcgtc 414
Query: 532 aggtctacttgattcatccttctttggaatataccagatgtttacaacttgctgatttac 591
||| || ||| || |||||||| |||||||||||||||||||| |||||||| || ||
Sbjct: 413 gggtttatctgaatcttccttcttgggaatataccagatgtttactacttgctggttcac 354
Query: 592 aatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaatac 651
||||||||||| ||||||||||||||| ||||| ||||| |||||||| | ||||| ||
Sbjct: 353 aatcattggccgcacaaaatgctcataaacatgcgcagcaccattgaagtagggcaagac 294
Query: 652 taaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtaccgg 711
|||||||||||||| ||||||||| ||||||||||||| ||||||||||| | ||| |
Sbjct: 293 caaccagcaattgaaaaacagctttccataagaccagaagggaagccattctattactgc 234
Query: 712 agcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccattg 771
||||||||| ||||| || ||||||||||| ||||||| ||||||||| |||||||||||
Sbjct: 233 agcaaaggtaagctcaaacagagtgataaacgagtacaacacccagtatgtgagccattg 174
Query: 772 ctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatacgc 831
||||||||| | || |||||||||||| ||||||| |||||| ||||| |||||||| ||
Sbjct: 173 ctgatcatctatagaagattttgtttctattgctcgaacagacgcatatagaggataagc 114
Query: 832 aagtgaaaccaaaggccccgcgaggacatccatgttgttgaccaagaccttgaggaaaga 891
|||||||| | ||||||||||| ||||| | |||| |||||| ||||||||||| ||
Sbjct: 113 gagtgaaactatgggccccgcgagaacatcgaggttgctgaccagcaccttgaggaagga 54
Query: 892 tcc 894
|||
Sbjct: 53 tcc 51
>gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F10_K20, mRNA sequence
Length = 787
Score = 254 bits (128), Expect = 2e-067
Identities = 323/388 (83%)
Strand = Plus / Minus
Query: 470 ttctcaaacgcttttgatccattttgctcaatgtacctctgtgcagctgaaattacatca 529
|||||||| |||| || |||||| | ||||| ||| ||| ||||||||| | |||||||
Sbjct: 413 ttctcaaatgcttctggtccattcagttcaatatacttctctgcagctgagagtacatca 354
Query: 530 tcaggtctacttgattcatccttctttggaatataccagatgtttacaacttgctgattt 589
|||||| ||||||| | |||||| |||| | |||||||||||||| | ||| ||||
Sbjct: 353 tcaggtttacttgacttatcctttcttgggacgtaccagatgtttactatttggcgattc 294
Query: 590 acaatcattggcctcacaaaatgctcatatacatgtgcagctccattgaactgtggcaat 649
| || |||||||| |||||||||||| || |||| ||||| |||||||| || ||
Sbjct: 293 aaaaacattggccgcacaaaatgctcgtaaacataagcagcaccattgaagcaaggtaaa 234
Query: 650 actaaccagcaattgaagaacagctttgcataagaccagaaaggaagccattcgagtacc 709
|||| ||||||||||||||||| |||| |||| | |||||||||||||||||| ||||
Sbjct: 233 actagccagcaattgaagaacaactttccatagggccagaaaggaagccattcaagtatt 174
Query: 710 ggagcaaaggtgagctcgaatagagtgataaatgagtacagcacccagtacgtgagccat 769
|||||||| |||||||| || | ||||||||||||||||| ||||||||| ||||||||
Sbjct: 173 ggagcaaatgtgagctcaaacaaagtgataaatgagtacaacacccagtaagtgagccac 114
Query: 770 tgctgatcatccacagcagattttgtttcaattgctctaacagaggcatacagaggatac 829
||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 113 tgctgatcatctacttgagattttgtttcaattgctctcacagaggcatatagaggataa 54
Query: 830 gcaagtgaaaccaaaggccccgcgagga 857
||||| ||||| | ||||| |||||||
Sbjct: 53 gcaagcgaaactagtggcccggcgagga 26
>gb|CN814741.1|CN814741 HRO4502_A04_A08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A04_A08, mRNA sequence
Length = 724
Score = 36.2 bits (18), Expect = 0.066
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 652 taaccagcaattgaagaa 669
||||||||||||||||||
Sbjct: 210 taaccagcaattgaagaa 193
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2729
Number of Sequences: 8143
Number of extensions: 2729
Number of successful extensions: 724
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 4
length of query: 1139
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1123
effective length of database: 4,572,175
effective search space: 5134552525
effective search space used: 5134552525
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)