BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.3
(438 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814680.1|CN814680 HRO4501_D01_G01ZS5 Lib AA071E1X Aven... 129 2e-030
gb|CN820687.1|CN820687 HRO4416_D03_H06ZS5 Lib AA069E1X Aven... 123 1e-028
gb|CN817497.1|CN817497 HRO4454_G02_N04ZS5 Lib AA070E1X Aven... 34 0.098
gb|CN821469.1|CN821469 HRO4425_F11_K21ZS5 Lib AA069E1X Aven... 32 0.39
>gb|CN814680.1|CN814680 HRO4501_D01_G01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_D01_G01, mRNA sequence
Length = 565
Score = 129 bits (65), Expect = 2e-030
Identities = 83/89 (93%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| |||||||| || ||||| || |||||||||||||||||||||||||||| ||||
Sbjct: 289 agcttgccctcgtgtgcgatgtaatttgaagggctgatggtgcaccctccatggctgcac 230
Query: 63 ttgaagcagctcttgtggtacatagtgtt 91
|||||||||||||||||||||||||||||
Sbjct: 229 ttgaagcagctcttgtggtacatagtgtt 201
Score = 103 bits (52), Expect = 1e-022
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| | || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 190 accctctcaatcgggtagactgtcttgctgcatccaaagcatttctctctggtgccagca 131
Query: 243 aaggcgcttgagactttagtagcattct 270
|| | ||| ||||||||| |||||||||
Sbjct: 130 aatgagctcgagactttaatagcattct 103
>gb|CN820687.1|CN820687 HRO4416_D03_H06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_D03_H06, mRNA
sequence
Length = 516
Score = 123 bits (62), Expect = 1e-028
Identities = 89/98 (90%)
Strand = Plus / Minus
Query: 3 agcttcccctcgtgcgcaatgtagttagaagggctgatggtgcaccctccatggcagcac 62
||||| || ||||| || ||||| || |||||||||||||||||||||||||||| ||||
Sbjct: 186 agcttgccttcgtgtgcgatgtaatttgaagggctgatggtgcaccctccatggctgcac 127
Query: 63 ttgaagcagctcttgtggtacatagtgttgttaacagt 100
||||||||||||||||||||||||||||| || |||||
Sbjct: 126 ttgaagcagctcttgtggtacatagtgttattgacagt 89
Score = 117 bits (59), Expect = 8e-027
Identities = 80/87 (91%)
Strand = Plus / Minus
Query: 183 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 242
||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 87 accctctcaattgggtagactgtcttgctgcatccaaaacatttctctctggtgccagca 28
Query: 243 aaggcgcttgagactttagtagcattc 269
|| | ||| ||||||||| ||||||||
Sbjct: 27 aatgagctcgagactttaatagcattc 1
>gb|CN817497.1|CN817497 HRO4454_G02_N04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4454_G02_N04, mRNA
sequence
Length = 489
Score = 34.2 bits (17), Expect = 0.098
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1 acagcttcccctcgtgc 17
|||||||||||||||||
Sbjct: 21 acagcttcccctcgtgc 5
>gb|CN821469.1|CN821469 HRO4425_F11_K21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_F11_K21, mRNA
sequence
Length = 491
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2 cagcttcccctcgtgc 17
||||||||||||||||
Sbjct: 24 cagcttcccctcgtgc 9
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1194
Number of Sequences: 8143
Number of extensions: 1194
Number of successful extensions: 304
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 6
length of query: 438
length of database: 4,702,463
effective HSP length: 16
effective length of query: 422
effective length of database: 4,572,175
effective search space: 1929457850
effective search space used: 1929457850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)