BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1805022.2.2
         (1462 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN819469.1|CN819469  HRO4406_C10_E20ZS5 Lib AA069E1X Aven...    36   0.085
gb|CN820624.1|CN820624  HRO4415_E10_J19ZS5 Lib AA069E1X Aven...    36   0.085
gb|CN817650.1|CN817650  HRO4463_A07_A13ZS5 Lib AA070E1X Aven...    34   0.34 
gb|CN818582.1|CN818582  HRO4457_G12_N23ZS5 Lib AA070E1X Aven...    34   0.34 

>gb|CN819469.1|CN819469 HRO4406_C10_E20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4406_C10_E20, mRNA
           sequence
          Length = 584

 Score = 36.2 bits (18), Expect = 0.085
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 298 aatttttacatctttttg 315
           ||||||||||||||||||
Sbjct: 377 aatttttacatctttttg 394



>gb|CN820624.1|CN820624 HRO4415_E10_J19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4415_E10_J19, mRNA
           sequence
          Length = 585

 Score = 36.2 bits (18), Expect = 0.085
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 298 aatttttacatctttttg 315
           ||||||||||||||||||
Sbjct: 483 aatttttacatctttttg 500



>gb|CN817650.1|CN817650 HRO4463_A07_A13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4463_A07_A13, mRNA sequence
          Length = 716

 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 400 aatggttcagcaacaag 416
           |||||||||||||||||
Sbjct: 102 aatggttcagcaacaag 86



>gb|CN818582.1|CN818582 HRO4457_G12_N23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4457_G12_N23, mRNA sequence
          Length = 614

 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 400 aatggttcagcaacaag 416
           |||||||||||||||||
Sbjct: 118 aatggttcagcaacaag 102



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3880
Number of Sequences: 8143
Number of extensions: 3880
Number of successful extensions: 1087
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 4
length of query: 1462
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1445
effective length of database: 4,564,032
effective search space: 6595026240
effective search space used: 6595026240
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)