BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.2
(964 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821469.1|CN821469 HRO4425_F11_K21ZS5 Lib AA069E1X Aven... 38 0.014
gb|CN817497.1|CN817497 HRO4454_G02_N04ZS5 Lib AA070E1X Aven... 36 0.056
gb|CN815951.1|CN815951 HRO4515_C06_F11ZS5 Lib AA071E1X Aven... 34 0.22
gb|CN817233.1|CN817233 HRO4464_D09_G18ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN817318.1|CN817318 HRO4454_D07_H14ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN818217.1|CN818217 HRO4470_G06_N12ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN818771.1|CN818771 HRO4468_D05_G10ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN818791.1|CN818791 HRO4473_A09_B17ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN818920.1|CN818920 HRO4473_A09_XXXZS5 Lib AA070E1X Aven... 34 0.22
gb|CN821169.1|CN821169 HRO4428_C06_F12ZS5 Lib AA069E1X Aven... 34 0.22
>gb|CN821469.1|CN821469 HRO4425_F11_K21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_F11_K21, mRNA
sequence
Length = 491
Score = 38.2 bits (19), Expect = 0.014
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2 attcggcacgaggggaagc 20
|||||||||||||||||||
Sbjct: 4 attcggcacgaggggaagc 22
>gb|CN817497.1|CN817497 HRO4454_G02_N04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4454_G02_N04, mRNA
sequence
Length = 489
Score = 36.2 bits (18), Expect = 0.056
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 3 ttcggcacgaggggaagc 20
||||||||||||||||||
Sbjct: 1 ttcggcacgaggggaagc 18
>gb|CN815951.1|CN815951 HRO4515_C06_F11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4515_C06_F11, mRNA sequence
Length = 433
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2 attcggcacgaggggaa 18
|||||||||||||||||
Sbjct: 2 attcggcacgaggggaa 18
>gb|CN817233.1|CN817233 HRO4464_D09_G18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4464_D09_G18, mRNA
sequence
Length = 706
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3 ttcggcacgaggggaag 19
|||||||||||||||||
Sbjct: 1 ttcggcacgaggggaag 17
>gb|CN817318.1|CN817318 HRO4454_D07_H14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4454_D07_H14, mRNA
sequence
Length = 491
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2 attcggcacgaggggaa 18
|||||||||||||||||
Sbjct: 2 attcggcacgaggggaa 18
>gb|CN818217.1|CN818217 HRO4470_G06_N12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4470_G06_N12, mRNA
sequence
Length = 711
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3 ttcggcacgaggggaag 19
|||||||||||||||||
Sbjct: 1 ttcggcacgaggggaag 17
>gb|CN818771.1|CN818771 HRO4468_D05_G10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4468_D05_G10, mRNA
sequence
Length = 513
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2 attcggcacgaggggaa 18
|||||||||||||||||
Sbjct: 2 attcggcacgaggggaa 18
>gb|CN818791.1|CN818791 HRO4473_A09_B17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_A09_B17, mRNA sequence
Length = 434
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1 aattcggcacgagggga 17
|||||||||||||||||
Sbjct: 373 aattcggcacgagggga 357
>gb|CN818920.1|CN818920 HRO4473_A09_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_A09_XXX, mRNA sequence
Length = 801
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1 aattcggcacgagggga 17
|||||||||||||||||
Sbjct: 573 aattcggcacgagggga 557
>gb|CN821169.1|CN821169 HRO4428_C06_F12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_C06_F12, mRNA
sequence
Length = 490
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3 ttcggcacgaggggaag 19
|||||||||||||||||
Sbjct: 1 ttcggcacgaggggaag 17
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4193
Number of Sequences: 8143
Number of extensions: 4193
Number of successful extensions: 1552
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1540
Number of HSP's gapped (non-prelim): 12
length of query: 964
length of database: 4,702,463
effective HSP length: 16
effective length of query: 948
effective length of database: 4,572,175
effective search space: 4334421900
effective search space used: 4334421900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)