BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.4
(667 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Aven... 98 1e-020
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 94 2e-019
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 70 3e-012
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 68 1e-011
gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Aven... 38 0.010
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 38 0.010
>gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A01_A02, mRNA sequence
Length = 474
Score = 97.6 bits (49), Expect = 1e-020
Identities = 100/117 (85%)
Strand = Plus / Plus
Query: 149 ggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggacacc 208
||||||||||||||| || || |||||||| ||| || |||| ||||| |||||||| ||
Sbjct: 11 ggtgattgtccatctctacccattcctcaagggtctgcttggaaggcagaacaggacccc 70
Query: 209 gacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggt 265
||| || |||||||||||||| ||||| ||||| || ||| |||| |||||||||||
Sbjct: 71 gacgatcgtcatcgtctggtcaatcctcctggcctccatcatctcgctcctttgggt 127
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 93.7 bits (47), Expect = 2e-019
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 72 gctggtgtttccaatgcaatcaataatggatacgagtcatggggccccctcttcgggaag 131
|||||||||||| | ||| |||| ||||| |||| |||||||||||||||||||||||||
Sbjct: 74 gctggtgtttccgacgcagtcaacaatggctacgggtcatggggccccctcttcgggaag 133
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaa 178
||||||||| | || ||||| || ||||| || || || ||||||||
Sbjct: 134 ctcttcttttccttctgggtcatcgtccacctctacccattcctcaa 180
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 69.9 bits (35), Expect = 3e-012
Identities = 134/167 (80%)
Strand = Plus / Plus
Query: 108 tcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtat 167
|||||||| || || ||||| |||||||||||||| || ||||||||||| || | ||
Sbjct: 103 tcatgggggccgctgttcggaaagctcttctttgccttctgggtgattgttcacttatac 162
Query: 168 cccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctgg 227
|| |||||||| ||| | | || ||| |||| | |||||||| |||||||||||||||
Sbjct: 163 ccattcctcaagggtcttatgggcaggacaaaccgcacaccgacgattgtcatcgtctgg 222
Query: 228 tccatcctgctggcttcaatcttctcactcctttgggttcggattga 274
| ||||| || ||||| |||||||| | || |||||||| |||||
Sbjct: 223 gctatcctcctcgcttcgatcttctccttgctgtgggttcgtattga 269
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 67.9 bits (34), Expect = 1e-011
Identities = 118/146 (80%)
Strand = Plus / Plus
Query: 108 tcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtat 167
|||||||| || |||||||| |||||||||||||| || ||||||||||| || | ||
Sbjct: 14 tcatgggggccgctcttcggaaagctcttctttgccttctgggtgattgttcacttatac 73
Query: 168 cccttcctcaaaggtttggttgggaggcaaaacaggacaccgacaattgtcatcgtctgg 227
|| |||||||| ||| | | || ||| |||| | |||||||| || ||||||||||||
Sbjct: 74 ccgttcctcaagggtcttatgggcaggacaaaccgcacaccgacgatcgtcatcgtctgg 133
Query: 228 tccatcctgctggcttcaatcttctc 253
| ||||| || ||||| ||||||||
Sbjct: 134 gctatcctcctcgcttcgatcttctc 159
>gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_C10_F19, mRNA sequence
Length = 515
Score = 38.2 bits (19), Expect = 0.010
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 216 gtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggttcggattga 274
|||||||||||| | ||||| || ||||| |||||||| | || |||||||| |||||
Sbjct: 11 gtcatcgtctgggctatcctcctcgcttcgatcttctccttgctgtgggttcgtattga 69
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 38.2 bits (19), Expect = 0.010
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 649 tacctgcccgggcggccgc 667
|||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgc 5
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1593
Number of Sequences: 8143
Number of extensions: 1593
Number of successful extensions: 409
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 10
length of query: 667
length of database: 4,702,463
effective HSP length: 16
effective length of query: 651
effective length of database: 4,572,175
effective search space: 2976485925
effective search space used: 2976485925
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)