BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.3
(671 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Aven... 98 1e-020
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 54 2e-007
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Aven... 38 0.010
>gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A01_A02, mRNA sequence
Length = 474
Score = 97.6 bits (49), Expect = 1e-020
Identities = 100/117 (85%)
Strand = Plus / Plus
Query: 21 ggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggacacc 80
||||||||||||||| || || |||||||| ||| || |||| ||||| |||||||| ||
Sbjct: 11 ggtgattgtccatctctacccattcctcaagggtctgcttggaaggcagaacaggacccc 70
Query: 81 gacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggt 137
||| || |||||||||||||| ||||| ||||| || ||| |||| |||||||||||
Sbjct: 71 gacgatcgtcatcgtctggtcaatcctcctggcctccatcatctcgctcctttgggt 127
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 54.0 bits (27), Expect = 2e-007
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||||||||||||| | ||||| || ||||| |||||||| | || |||
Sbjct: 199 acaccgacgattgtcatcgtctgggctatcctcctcgcttcgatcttctccttgctgtgg 258
Query: 136 gttcggattga 146
||||| |||||
Sbjct: 259 gttcgtattga 269
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 44.1 bits (22), Expect = 2e-004
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctc 125
|||||||| || |||||||||||| | ||||| || ||||| ||||||||
Sbjct: 110 acaccgacgatcgtcatcgtctgggctatcctcctcgcttcgatcttctc 159
>gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_C10_F19, mRNA sequence
Length = 515
Score = 38.2 bits (19), Expect = 0.010
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 88 gtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggttcggattga 146
|||||||||||| | ||||| || ||||| |||||||| | || |||||||| |||||
Sbjct: 11 gtcatcgtctgggctatcctcctcgcttcgatcttctccttgctgtgggttcgtattga 69
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1567
Number of Sequences: 8143
Number of extensions: 1567
Number of successful extensions: 403
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 7
length of query: 671
length of database: 4,702,463
effective HSP length: 16
effective length of query: 655
effective length of database: 4,572,175
effective search space: 2994774625
effective search space used: 2994774625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)