BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804918.2.5
(733 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815574.1|CN815574 HRO4513_B10_C19ZS5 Lib AA071E1X Aven... 157 2e-038
gb|CN817719.1|CN817719 HRO4453_G07_N13ZS5 Lib AA070E1X Aven... 36 0.042
gb|CN817738.1|CN817738 HRO4461_E05_J09ZS5 Lib AA070E1X Aven... 36 0.042
gb|CN818091.1|CN818091 HRO4472_A04_A08ZS5 Lib AA070E1X Aven... 36 0.042
gb|CN818675.1|CN818675 HRO4467_F11_K21ZS5 Lib AA070E1X Aven... 36 0.042
gb|CN818759.1|CN818759 HRO4468_C09_E18ZS5 Lib AA070E1X Aven... 36 0.042
gb|CN820215.1|CN820215 HRO4412_F09_L18ZS5 Lib AA069E1X Aven... 36 0.042
gb|CN815073.1|CN815073 HRO4505_E10_I19ZS5 Lib AA071E1X Aven... 34 0.17
>gb|CN815574.1|CN815574 HRO4513_B10_C19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B10_C19, mRNA sequence
Length = 716
Score = 157 bits (79), Expect = 2e-038
Identities = 127/143 (88%)
Strand = Plus / Plus
Query: 222 aagcggacgggatctcgacctcgccgtcatcaatctcctgctgcaggtccttggggtcct 281
||||||| ||||||||||||||||| || || |||||| ||||||||||||||||||||
Sbjct: 289 aagcggaggggatctcgacctcgccttcgtcgatctccgtctgcaggtccttggggtcct 348
Query: 282 tgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctccttgacggtgccgg 341
| ||||| ||||||||||| ||||||||||| || ||||||||||||||||| || ||||
Sbjct: 349 tcccgtcaacggtgcacccaacgctgacgcatgtaccgaggatctccttgacagtcccgg 408
Query: 342 ccaactccttggccatggacctg 364
| |||||||||||||||||||
Sbjct: 409 taatctccttggccatggacctg 431
>gb|CN817719.1|CN817719 HRO4453_G07_N13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_G07_N13, mRNA sequence
Length = 403
Score = 36.2 bits (18), Expect = 0.042
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 577 cttggcgatgtcctcgcc 594
||||||||||||||||||
Sbjct: 248 cttggcgatgtcctcgcc 265
>gb|CN817738.1|CN817738 HRO4461_E05_J09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E05_J09, mRNA sequence
Length = 260
Score = 36.2 bits (18), Expect = 0.042
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 577 cttggcgatgtcctcgcc 594
||||||||||||||||||
Sbjct: 104 cttggcgatgtcctcgcc 121
>gb|CN818091.1|CN818091 HRO4472_A04_A08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_A04_A08, mRNA sequence
Length = 304
Score = 36.2 bits (18), Expect = 0.042
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 577 cttggcgatgtcctcgcc 594
||||||||||||||||||
Sbjct: 48 cttggcgatgtcctcgcc 65
>gb|CN818675.1|CN818675 HRO4467_F11_K21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_F11_K21, mRNA sequence
Length = 452
Score = 36.2 bits (18), Expect = 0.042
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 577 cttggcgatgtcctcgcc 594
||||||||||||||||||
Sbjct: 315 cttggcgatgtcctcgcc 332
>gb|CN818759.1|CN818759 HRO4468_C09_E18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_C09_E18, mRNA sequence
Length = 320
Score = 36.2 bits (18), Expect = 0.042
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 577 cttggcgatgtcctcgcc 594
||||||||||||||||||
Sbjct: 183 cttggcgatgtcctcgcc 200
>gb|CN820215.1|CN820215 HRO4412_F09_L18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_F09_L18, mRNA
sequence
Length = 417
Score = 36.2 bits (18), Expect = 0.042
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 577 cttggcgatgtcctcgcc 594
||||||||||||||||||
Sbjct: 150 cttggcgatgtcctcgcc 133
>gb|CN815073.1|CN815073 HRO4505_E10_I19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_E10_I19, mRNA sequence
Length = 513
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 386 tcgacgacgtcgtcgag 402
|||||||||||||||||
Sbjct: 244 tcgacgacgtcgtcgag 260
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 385 ctcgacgacgtcgtcga 401
|||||||||||||||||
Sbjct: 260 ctcgacgacgtcgtcga 244
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1977
Number of Sequences: 8143
Number of extensions: 1977
Number of successful extensions: 630
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 620
Number of HSP's gapped (non-prelim): 10
length of query: 733
length of database: 4,702,463
effective HSP length: 16
effective length of query: 717
effective length of database: 4,572,175
effective search space: 3278249475
effective search space used: 3278249475
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)