BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804904.2.2
(798 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819453.1|CN819453 HRO4406_A10_A20ZS5 Lib AA069E1X Aven... 387 e-107
gb|CN819570.1|CN819570 HRO4401_F11_K21ZS5 Lib AA069E1X Aven... 72 8e-013
gb|BE439232.1|BE439232 CDO1241_WHE03F05R ITEC CDO Oat cDNA ... 36 0.046
emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein 34 0.18
>gb|CN819453.1|CN819453 HRO4406_A10_A20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_A10_A20, mRNA
sequence
Length = 567
Score = 387 bits (195), Expect = e-107
Identities = 297/331 (89%)
Strand = Plus / Plus
Query: 141 tatggccgtctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggatgcc 200
|||||||| ||||| ||||||||||| || |||||||||||| ||||||||||||||||
Sbjct: 1 tatggccgcctcgtggtcatcgtcgacgtcgtcgaccagaaccgggcacttgtggatgct 60
Query: 201 cctgatatggtcaggtgccaggtgaacttcaagcggctctcacttactgacatcaagatt 260
|| |||||||||||||||||| | ||||||||||| || || || |||||||| |||||
Sbjct: 61 cccgatatggtcaggtgccagattaacttcaagcgtctttctctgactgacattaagatc 120
Query: 261 gacatcaaacgtgtccccaagaagacaaccctgatcaaggcgatggaggaagctgatgtg 320
|||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||
Sbjct: 121 gacatcaagcgtgtccccaagaaggcaactttgatcaaggcaatggaggaagctgatgtg 180
Query: 321 aagaccaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagagca 380
|||| |||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 181 aagagcaagtgggagaacagctcgtggggcaagaagcttattgtccagaagagaagagcg 240
Query: 381 tcgctcaatgactttgataggttcaaagtcatgctggcgaagattaagaggggtggtgct 440
||||| ||||||||||| |||||||| |||||| |||| ||||||||||| || ||||||
Sbjct: 241 tcgctgaatgactttgacaggttcaaggtcatgttggctaagattaagagaggcggtgct 300
Query: 441 atcaggcaagagctcgccaagcttaagaagg 471
|||||||||||||| |||||||| |||||||
Sbjct: 301 atcaggcaagagcttgccaagctcaagaagg 331
>gb|CN819570.1|CN819570 HRO4401_F11_K21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_F11_K21, mRNA
sequence
Length = 275
Score = 71.9 bits (36), Expect = 8e-013
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 400 ggttcaaagtcatgctggcgaagattaagaggggtggtgctatcaggcaagagctcgcca 459
||||||| ||||| ||||| ||||| |||||||| || ||||||||||||||||| | |
Sbjct: 10 ggttcaaggtcattctggccaagatcaagaggggaggagctatcaggcaagagctttcga 69
Query: 460 agcttaagaagg 471
||||||||||||
Sbjct: 70 agcttaagaagg 81
>gb|BE439232.1|BE439232 CDO1241_WHE03F05R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1241_WHE03, mRNA sequence
Length = 217
Score = 36.2 bits (18), Expect = 0.046
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 59 cgccgccaccgccaccgc 76
||||||||||||||||||
Sbjct: 183 cgccgccaccgccaccgc 200
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
Length = 2287
Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 60 gccgccaccgccaccgc 76
|||||||||||||||||
Sbjct: 2016 gccgccaccgccaccgc 2032
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1841
Number of Sequences: 8143
Number of extensions: 1841
Number of successful extensions: 502
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 4
length of query: 798
length of database: 4,702,463
effective HSP length: 16
effective length of query: 782
effective length of database: 4,572,175
effective search space: 3575440850
effective search space used: 3575440850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)