BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804898.2.1
(739 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816077.1|CN816077 HRO4516_F10_L20ZS5 Lib AA071E1X Aven... 34 0.17
gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Aven... 34 0.17
gb|CN817338.1|CN817338 HRO4465_B10_D19ZS5 Lib AA070E1X Aven... 34 0.17
>gb|CN816077.1|CN816077 HRO4516_F10_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4516_F10_L20, mRNA sequence
Length = 805
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23 gccgccgtcgtcgccgc 39
|||||||||||||||||
Sbjct: 6 gccgccgtcgtcgccgc 22
>gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_A07_B14, mRNA sequence
Length = 491
Score = 34.2 bits (17), Expect = 0.17
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 16 cgccgccgccgccgtcgtcgccgcc 40
||||||||||||||| | |||||||
Sbjct: 231 cgccgccgccgccgtagccgccgcc 207
>gb|CN817338.1|CN817338 HRO4465_B10_D19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green
leaf Avena sativa cDNA clone HRO4465_B10_D19, mRNA
sequence
Length = 312
Score = 34.2 bits (17), Expect = 0.17
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 16 cgccgccgccgccgtcgtcgccgcc 40
||||||||||||||| | |||||||
Sbjct: 57 cgccgccgccgccgtagccgccgcc 33
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2197
Number of Sequences: 8143
Number of extensions: 2197
Number of successful extensions: 560
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 545
Number of HSP's gapped (non-prelim): 11
length of query: 739
length of database: 4,702,463
effective HSP length: 16
effective length of query: 723
effective length of database: 4,572,175
effective search space: 3305682525
effective search space used: 3305682525
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)