BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1738980.2.1
         (917 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE439371.1|BE439371  CDO1510_WHE05H09R ITEC CDO Oat cDNA ...    52   9e-007
gb|CN818490.1|CN818490  HRO4460_C06_E12ZS5 Lib AA070E1X Aven...    40   0.003
gb|CN815938.1|CN815938  HRO4515_B05_D09ZS5 Lib AA071E1X Aven...    38   0.013
gb|CN814887.1|CN814887  HRO4503_E11_J21ZS5 Lib AA071E1X Aven...    36   0.053

>gb|BE439371.1|BE439371 CDO1510_WHE05H09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
           CDO1510_WHE05H09, mRNA sequence
          Length = 237

 Score = 52.0 bits (26), Expect = 9e-007
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 216 caacccggtgcacaggaaggtgcccgtgct 245
           |||||||||||||| |||||||||||||||
Sbjct: 160 caacccggtgcacaagaaggtgcccgtgct 189



>gb|CN818490.1|CN818490 HRO4460_C06_E12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4460_C06_E12, mRNA sequence
          Length = 252

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 651 gtgggcggagcgcttcttggcggtggacgccg 682
           |||||||||||||||| | ||| |||||||||
Sbjct: 14  gtgggcggagcgcttccttgcgctggacgccg 45



>gb|CN815938.1|CN815938 HRO4515_B05_D09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4515_B05_D09, mRNA sequence
          Length = 420

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 771 gctgtaactgtaagcctgt 789
           |||||||||||||||||||
Sbjct: 269 gctgtaactgtaagcctgt 287



>gb|CN814887.1|CN814887 HRO4503_E11_J21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4503_E11_J21, mRNA sequence
          Length = 736

 Score = 36.2 bits (18), Expect = 0.053
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 459 cgtcgtcgtccccgtggtggag 480
           ||||| ||||||||||||||||
Sbjct: 207 cgtcgccgtccccgtggtggag 186



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1879
Number of Sequences: 8143
Number of extensions: 1879
Number of successful extensions: 537
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 5
length of query: 917
length of database: 4,702,463
effective HSP length: 16
effective length of query: 901
effective length of database: 4,572,175
effective search space: 4119529675
effective search space used: 4119529675
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)