BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738863.2.3
(730 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819554.1|CN819554 HRO4401_E06_I11ZS5 Lib AA069E1X Aven... 119 4e-027
gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Aven... 44 2e-004
gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Aven... 44 2e-004
gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Aven... 34 0.17
gb|CN815734.1|CN815734 HRO4514_H10_O20ZS5 Lib AA071E1X Aven... 34 0.17
gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Aven... 34 0.17
gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Aven... 34 0.17
gb|CN816556.1|CN816556 HRO4522_B02_C04ZS5 Lib AA071E1X Aven... 34 0.17
gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Aven... 34 0.17
gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Aven... 34 0.17
>gb|CN819554.1|CN819554 HRO4401_E06_I11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_E06_I11, mRNA
sequence
Length = 465
Score = 119 bits (60), Expect = 4e-027
Identities = 109/124 (87%), Gaps = 1/124 (0%)
Strand = Plus / Plus
Query: 172 gtgtgcctctg-caccaccatcaagctcaggctcctcaacatcaacctctacctgccact 230
||||||||||| |||||||||| |||||||| ||||||||||||||| ||| || ||
Sbjct: 6 gtgtgcctctgtcaccaccatccgcctcaggctgctcaacatcaacctcgtcctcccgct 65
Query: 231 ggcgctccagctcctcctcacctgcggcaagacgccgccgccgggctacacctgcaccgt 290
|| ||||||||||||||||||||||||||||||||||| || |||||||| |||||| |
Sbjct: 66 cgccctccagctcctcctcacctgcggcaagacgccgccccccggctacacgtgcaccat 125
Query: 291 ctga 294
||||
Sbjct: 126 ctga 129
Score = 44.1 bits (22), Expect = 2e-004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 476 ggtcgatcagctaacgatggatcgat 501
|||||||||||||| |||||||||||
Sbjct: 221 ggtcgatcagctaaggatggatcgat 246
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 397 gacatgagaggatgtcgtc 415
|||||||||||||||||||
Sbjct: 161 gacatgagaggatgtcgtc 179
>gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_D08_H16, mRNA sequence
Length = 419
Score = 44.1 bits (22), Expect = 2e-004
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 166 gcggccgtgtgcctctgcaccaccatcaag 195
||||| ||||||||||||||| ||||||||
Sbjct: 28 gcggcggtgtgcctctgcaccgccatcaag 57
>gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_A05_B10, mRNA
sequence
Length = 457
Score = 44.1 bits (22), Expect = 2e-004
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 166 gcggccgtgtgcctctgcaccaccatcaag 195
||||| ||||||||||||||| ||||||||
Sbjct: 66 gcggcggtgtgcctctgcaccgccatcaag 95
>gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A11_A22, mRNA sequence
Length = 684
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaag 195
|||||||||||| ||||||||
Sbjct: 322 tgcctctgcaccgccatcaag 342
>gb|CN815734.1|CN815734 HRO4514_H10_O20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_H10_O20, mRNA sequence
Length = 492
Score = 34.2 bits (17), Expect = 0.17
Identities = 41/49 (83%)
Strand = Plus / Plus
Query: 147 ggggctggtggagctggaggcggccgtgtgcctctgcaccaccatcaag 195
||||||||| || || || || ||||| |||||||||||| || |||||
Sbjct: 123 ggggctggtcgacctcgacgccgccgtctgcctctgcaccgccgtcaag 171
>gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_H01_O02, mRNA sequence
Length = 405
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaag 195
|||||||||||| ||||||||
Sbjct: 26 tgcctctgcaccgccatcaag 46
>gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G06_M11, mRNA sequence
Length = 546
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaag 195
|||||||||||| ||||||||
Sbjct: 168 tgcctctgcaccgccatcaag 188
>gb|CN816556.1|CN816556 HRO4522_B02_C04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_B02_C04, mRNA sequence
Length = 446
Score = 34.2 bits (17), Expect = 0.17
Identities = 41/49 (83%)
Strand = Plus / Plus
Query: 147 ggggctggtggagctggaggcggccgtgtgcctctgcaccaccatcaag 195
||||||||| || || || || ||||| |||||||||||| || |||||
Sbjct: 21 ggggctggtcgacctcgacgccgccgtctgcctctgcaccgccgtcaag 69
>gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_A03_A05, mRNA sequence
Length = 374
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaag 195
|||||||||||| ||||||||
Sbjct: 16 tgcctctgcaccgccatcaag 36
>gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G03_N05, mRNA sequence
Length = 388
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 175 tgcctctgcaccaccatcaag 195
|||||||||||| ||||||||
Sbjct: 28 tgcctctgcaccgccatcaag 48
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2113
Number of Sequences: 8143
Number of extensions: 2113
Number of successful extensions: 576
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 14
length of query: 730
length of database: 4,702,463
effective HSP length: 16
effective length of query: 714
effective length of database: 4,572,175
effective search space: 3264532950
effective search space used: 3264532950
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)