BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1716424.2.3
         (1842 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816837.1|CN816837  HRO4525_D03_G05ZS5 Lib AA071E1X Aven...    34   0.42 
dbj|AB076980.1|  Avena sativa AsHHT1 mRNA for hydroxyanthran...    34   0.42 
dbj|AB076982.1|  Avena sativa AsHHT3 mRNA for hydroxyanthran...    34   0.42 
gb|AY847064.1|  Avena sativa Aux/IAA3 mRNA, partial cds            34   0.42 
emb|Z15131.1|ASBGLUCAN  A.sativa mRNA for beta glucanase           34   0.42 

>gb|CN816837.1|CN816837 HRO4525_D03_G05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4525_D03_G05, mRNA sequence
          Length = 720

 Score = 34.2 bits (17), Expect = 0.42
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1540 gaaggtgagcatggacg 1556
            |||||||||||||||||
Sbjct: 31   gaaggtgagcatggacg 47



>dbj|AB076980.1| Avena sativa AsHHT1 mRNA for hydroxyanthranilate
           hydroxycinnamoyltransferase 1, complete cds
          Length = 1755

 Score = 34.2 bits (17), Expect = 0.42
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 588 agtcgccgtcgacggccgtggacat 612
           |||||||| | ||||||||||||||
Sbjct: 813 agtcgccgcccacggccgtggacat 837



>dbj|AB076982.1| Avena sativa AsHHT3 mRNA for hydroxyanthranilate
           hydroxycinnamoyltransferase 3, complete cds
          Length = 1659

 Score = 34.2 bits (17), Expect = 0.42
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 588 agtcgccgtcgacggccgtggacat 612
           |||||||| | ||||||||||||||
Sbjct: 686 agtcgccgcccacggccgtggacat 710



>gb|AY847064.1| Avena sativa Aux/IAA3 mRNA, partial cds
          Length = 360

 Score = 34.2 bits (17), Expect = 0.42
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1540 gaaggtgagcatggacg 1556
            |||||||||||||||||
Sbjct: 168  gaaggtgagcatggacg 184



>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
          Length = 1448

 Score = 34.2 bits (17), Expect = 0.42
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1633 tgccgccgccgcctcct 1649
            |||||||||||||||||
Sbjct: 309  tgccgccgccgcctcct 325



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4233
Number of Sequences: 8143
Number of extensions: 4233
Number of successful extensions: 1239
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1233
Number of HSP's gapped (non-prelim): 6
length of query: 1842
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1825
effective length of database: 4,564,032
effective search space: 8329358400
effective search space used: 8329358400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)