BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1716394.2.1
         (1074 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN820358.1|CN820358  HRO4418_D12_G24ZS5 Lib AA069E1X Aven...    38   0.016
gb|CN815652.1|CN815652  HRO4514_A06_A12ZS5 Lib AA071E1X Aven...    36   0.062
gb|AM071411.1|AM071411  AM071411 Avena sativa leaf 3 weeks o...    36   0.062

>gb|CN820358.1|CN820358 HRO4418_D12_G24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
            leaf Avena sativa cDNA clone HRO4418_D12_G24, mRNA
            sequence
          Length = 812

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 988  aggaggaggaggaggaaga 1006
            |||||||||||||||||||
Sbjct: 199  aggaggaggaggaggaaga 217




 Score = 34.2 bits (17), Expect = 0.25
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                 
Query: 988  aggaggaggaggaggaagacg 1008
            ||||||||||||| |||||||
Sbjct: 202  aggaggaggaggaagaagacg 222



>gb|CN815652.1|CN815652 HRO4514_A06_A12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4514_A06_A12, mRNA sequence
          Length = 825

 Score = 36.2 bits (18), Expect = 0.062
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 993  gaggaggaggaagacgag 1010
            ||||||||||||||||||
Sbjct: 53   gaggaggaggaagacgag 70



>gb|AM071411.1|AM071411 AM071411 Avena sativa leaf 3 weeks old, post-germination Avena
           sativa cDNA clone ASCID1-1_019_a09, mRNA sequence
          Length = 579

 Score = 36.2 bits (18), Expect = 0.062
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 898 gccgccgccttctccgac 915
           ||||||||||||||||||
Sbjct: 104 gccgccgccttctccgac 87



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2853
Number of Sequences: 8143
Number of extensions: 2853
Number of successful extensions: 864
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 6
length of query: 1074
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1058
effective length of database: 4,572,175
effective search space: 4837361150
effective search space used: 4837361150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)