BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716296.2.7
(851 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Aven... 111 1e-024
gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Aven... 72 9e-013
>gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F11_K22, mRNA sequence
Length = 584
Score = 111 bits (56), Expect = 1e-024
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 273 ggcttcgttaccttctcctccgagaactccatgctcgacgctatcgagaacatgaacggc 332
|||||||| ||||||||||| ||| | ||||||| |||||| |||||| ||||||||||
Sbjct: 54 ggcttcgtcaccttctcctctgagcagtccatgcgcgacgccatcgagggcatgaacggc 113
Query: 333 aaggagctcgacggccgtaacatcaccgttaaccaggcccagtc 376
||||| ||||||||||| ||||||||||| ||| ||||||||||
Sbjct: 114 aaggacctcgacggccgcaacatcaccgtcaacgaggcccagtc 157
>gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_A07_B14, mRNA sequence
Length = 491
Score = 71.9 bits (36), Expect = 9e-013
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 323 catgaacggcaaggagctcgacggccgtaacatcaccgttaaccaggcccagtccc 378
|||||||||| |||| ||||||||||| ||||||||||| ||| ||||||||||||
Sbjct: 8 catgaacggccaggacctcgacggccgcaacatcaccgtcaacgaggcccagtccc 63
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1221
Number of Sequences: 8143
Number of extensions: 1221
Number of successful extensions: 319
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 2
length of query: 851
length of database: 4,702,463
effective HSP length: 16
effective length of query: 835
effective length of database: 4,572,175
effective search space: 3817766125
effective search space used: 3817766125
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)