BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1366945.2.1
(1191 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820999.1|CN820999 HRO4422_D06_G12ZS5 Lib AA069E1X Aven... 163 4e-040
gb|CN821378.1|CN821378 HRO4424_F06_L12ZS5 Lib AA069E1X Aven... 133 4e-031
gb|CN815966.1|CN815966 HRO4515_D09_H17ZS5 Lib AA071E1X Aven... 107 2e-023
gb|CN814946.1|CN814946 HRO4504_B12_D24ZS5 Lib AA071E1X Aven... 96 9e-020
gb|CN817655.1|CN817655 HRO4463_A12_A23ZS5 Lib AA070E1X Aven... 96 9e-020
gb|CN817689.1|CN817689 HRO4461_H02_P03ZS5 Lib AA070E1X Aven... 80 5e-015
gb|CN819887.1|CN819887 HRO4407_D04_H07ZS5 Lib AA069E1X Aven... 64 3e-010
gb|CN818946.1|CN818946 HRO4474_G06_N12ZS5 Lib AA070E1X Aven... 62 1e-009
gb|CN816002.1|CN816002 HRO4515_G10_N19ZS5 Lib AA071E1X Aven... 46 7e-005
gb|CN817616.1|CN817616 HRO4463_C07_E13ZS5 Lib AA070E1X Aven... 38 0.018
gb|CN817878.1|CN817878 HRO4462_D05_H10ZS5 Lib AA070E1X Aven... 38 0.018
gb|CN817882.1|CN817882 HRO4462_D09_H18ZS5 Lib AA070E1X Aven... 38 0.018
gb|CN818324.1|CN818324 HRO4470_A04_B08ZS5 Lib AA070E1X Aven... 38 0.018
gb|CN818499.1|CN818499 HRO4460_B07_C14ZS5 Lib AA070E1X Aven... 38 0.018
gb|CN818811.1|CN818811 HRO4473_F12_XXXZS5 Lib AA070E1X Aven... 38 0.018
gb|CN819070.1|CN819070 HRO4469_A09_B17ZS5 Lib AA070E1X Aven... 38 0.018
gb|CN819163.1|CN819163 HRO4468_E07_I14ZS5 Lib AA070E1X Aven... 38 0.018
gb|CN815393.1|CN815393 HRO4509_B08_C15ZS5 Lib AA071E1X Aven... 36 0.069
gb|CN819958.1|CN819958 HRO4409_B10_C19ZS5 Lib AA069E1X Aven... 36 0.069
gb|CN821070.1|CN821070 HRO4427_B10_D19ZS5 Lib AA069E1X Aven... 36 0.069
gb|CN814796.1|CN814796 HRO4502_E12_I24ZS5 Lib AA071E1X Aven... 34 0.27
gb|CN819667.1|CN819667 HRO4402_G07_M14ZS5 Lib AA069E1X Aven... 34 0.27
gb|CN821041.1|CN821041 HRO4422_H04_O08ZS5 Lib AA069E1X Aven... 34 0.27
gb|CN821226.1|CN821226 HRO4428_H09_P18ZS5 Lib AA069E1X Aven... 34 0.27
>gb|CN820999.1|CN820999 HRO4422_D06_G12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D06_G12, mRNA
sequence
Length = 324
Score = 163 bits (82), Expect = 4e-040
Identities = 124/138 (89%)
Strand = Plus / Plus
Query: 200 gctggtggaaccagcagctcagcgacatgagctaccgccgcatgcgctgggtgcagcgca 259
|||||||||||||| |||||||||||||||||||||||| |||| | ||||||||| | |
Sbjct: 50 gctggtggaaccaggagctcagcgacatgagctaccgccacatgaggtgggtgcagagga 109
Query: 260 agttcatgatctacaactactgcgccgacgccaagcgcttcccgcagggcgtgcccgccg 319
||||||||||||||||||||||| ||||| |||||||| || | ||||||| |||||||
Sbjct: 110 agttcatgatctacaactactgcaccgaccccaagcgcgtcgccgagggcgtccccgccg 169
Query: 320 agtgcaagctccggtgag 337
||||||||||||| ||||
Sbjct: 170 agtgcaagctccgctgag 187
>gb|CN821378.1|CN821378 HRO4424_F06_L12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_F06_L12, mRNA
sequence
Length = 356
Score = 133 bits (67), Expect = 4e-031
Identities = 123/141 (87%), Gaps = 3/141 (2%)
Strand = Plus / Plus
Query: 200 gctggtggaaccagcagctcagcgacatgagctaccgccgcatgcgctgggtgcagcgca 259
|||||||||||||| ||||||||||||||||||||||||||||| | ||||||||| | |
Sbjct: 37 gctggtggaaccaggagctcagcgacatgagctaccgccgcatgaggtgggtgcagagga 96
Query: 260 agttcatgatctacaactactgcgccgacgccaagcgcttcccgcagggc---gtgcccg 316
|||| ||||||||||||||||| ||||| |||||||| || | ||||| || ||||
Sbjct: 97 agtttatgatctacaactactgtaccgaccccaagcgcgtcgccgagggcacagtccccg 156
Query: 317 ccgagtgcaagctccggtgag 337
|||||||||||||||| ||||
Sbjct: 157 ccgagtgcaagctccgttgag 177
>gb|CN815966.1|CN815966 HRO4515_D09_H17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D09_H17, mRNA sequence
Length = 442
Score = 107 bits (54), Expect = 2e-023
Identities = 96/110 (87%)
Strand = Plus / Plus
Query: 793 caaggcgagcgccggcgggttcgaggcggccgccgagggcggcggctgcgactgcaacac 852
|||||| ||| |||||||||||||| ||||| |||| ||||||||||||||||| |||
Sbjct: 78 caaggccagctccggcgggttcgagatggccggggaggccggcggctgcgactgcaccac 137
Query: 853 ctgcaactgcggcaccagctgcggctgctcctgctgcagctgcaactgag 902
|||||| ||||| ||| |||||||||||||||||||| |||||| ||||
Sbjct: 138 ctgcaagtgcggtaccgcctgcggctgctcctgctgcaactgcaagtgag 187
>gb|CN814946.1|CN814946 HRO4504_B12_D24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_B12_D24, mRNA sequence
Length = 482
Score = 95.6 bits (48), Expect = 9e-020
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 832 cggcggctgcgactgcaacacctgcaactgcggcaccagctgcggctgctcctgctgcag 891
||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 255 cggcggctgcggctgcagcacctgcaagtgcggcaccagctgcggctgcacctgctgcag 314
Query: 892 ctgc 895
||||
Sbjct: 315 ctgc 318
Score = 38.2 bits (19), Expect = 0.018
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 691 ctgcaactgcggcagcggatgcggcggctgc 721
|||||||||||||||||| ||| |||||||
Sbjct: 114 ctgcaactgcggcagcggctgcaacggctgc 144
>gb|CN817655.1|CN817655 HRO4463_A12_A23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_A12_A23, mRNA sequence
Length = 500
Score = 95.6 bits (48), Expect = 9e-020
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 832 cggcggctgcgactgcaacacctgcaactgcggcaccagctgcggctgctcctgctgcag 891
||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 254 cggcggctgcggctgcagcacctgcaagtgcggcaccagctgcggctgcacctgctgcag 313
Query: 892 ctgc 895
||||
Sbjct: 314 ctgc 317
Score = 38.2 bits (19), Expect = 0.018
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 691 ctgcaactgcggcagcggatgcggcggctgc 721
|||||||||||||||||| ||| |||||||
Sbjct: 113 ctgcaactgcggcagcggctgcaacggctgc 143
>gb|CN817689.1|CN817689 HRO4461_H02_P03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_H02_P03, mRNA sequence
Length = 724
Score = 79.8 bits (40), Expect = 5e-015
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 832 cggcggctgcgactgcaacacctgcaactgcggcaccagctgcggctgctcctgctgcag 891
||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 643 cggcggctgcggctgcggcacttgcaagtgcggcaccagctgcggctgctcctgctgcac 702
Query: 892 ctgc 895
||||
Sbjct: 703 ctgc 706
>gb|CN819887.1|CN819887 HRO4407_D04_H07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_D04_H07, mRNA
sequence
Length = 164
Score = 63.9 bits (32), Expect = 3e-010
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 241 atgcgctgggtgcagcgcaagttcatgatctacaactactgcgccgacgccaagcg 296
||||| ||||||||| |||| | ||||||||||||||||||| ||||| |||||||
Sbjct: 39 atgcggtgggtgcagagcaactacatgatctacaactactgcaccgaccccaagcg 94
>gb|CN818946.1|CN818946 HRO4474_G06_N12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_G06_N12, mRNA sequence
Length = 301
Score = 61.9 bits (31), Expect = 1e-009
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 853 ctgcaactgcggcaccagctgcggctgctcctgctgcagctgc 895
|||||| ||||||||||||||||||||| ||||||||| ||||
Sbjct: 92 ctgcaagtgcggcaccagctgcggctgcacctgctgcacctgc 134
>gb|CN816002.1|CN816002 HRO4515_G10_N19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_G10_N19, mRNA sequence
Length = 609
Score = 46.1 bits (23), Expect = 7e-005
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 270 ctacaactactgcgccgacgccaagcgcttcccgcagggcgtgcccgccgagtgc 324
|||||||||||| ||||||| ||| |||||||||||| | ||||||||||||
Sbjct: 468 ctacaactactgtgccgacggttggcggttcccgcagggcttccccgccgagtgc 522
>gb|CN817616.1|CN817616 HRO4463_C07_E13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_C07_E13, mRNA sequence
Length = 547
Score = 38.2 bits (19), Expect = 0.018
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 854 tgcaactgcggcaccagctgcggctgc 880
||||| ||||||||||||||| |||||
Sbjct: 165 tgcaagtgcggcaccagctgcagctgc 191
>gb|CN817878.1|CN817878 HRO4462_D05_H10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_D05_H10, mRNA sequence
Length = 586
Score = 38.2 bits (19), Expect = 0.018
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 854 tgcaactgcggcaccagctgcggctgc 880
||||| ||||||||||||||| |||||
Sbjct: 222 tgcaagtgcggcaccagctgcagctgc 248
>gb|CN817882.1|CN817882 HRO4462_D09_H18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_D09_H18, mRNA sequence
Length = 765
Score = 38.2 bits (19), Expect = 0.018
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 854 tgcaactgcggcaccagctgcggctgc 880
||||| ||||||||||||||| |||||
Sbjct: 394 tgcaagtgcggcaccagctgcagctgc 420
>gb|CN818324.1|CN818324 HRO4470_A04_B08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_A04_B08, mRNA sequence
Length = 467
Score = 38.2 bits (19), Expect = 0.018
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 854 tgcaactgcggcaccagctgcggctgc 880
||||| ||||||||||||||| |||||
Sbjct: 85 tgcaagtgcggcaccagctgcagctgc 111
>gb|CN818499.1|CN818499 HRO4460_B07_C14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_B07_C14, mRNA sequence
Length = 595
Score = 38.2 bits (19), Expect = 0.018
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 854 tgcaactgcggcaccagctgcggctgc 880
||||| ||||||||||||||| |||||
Sbjct: 225 tgcaagtgcggcaccagctgcagctgc 251
>gb|CN818811.1|CN818811 HRO4473_F12_XXXZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4473_F12_XXX, mRNA sequence
Length = 572
Score = 38.2 bits (19), Expect = 0.018
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 854 tgcaactgcggcaccagctgcggctgc 880
||||| ||||||||||||||| |||||
Sbjct: 214 tgcaagtgcggcaccagctgcagctgc 240
>gb|CN819070.1|CN819070 HRO4469_A09_B17ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_A09_B17, mRNA sequence
Length = 625
Score = 38.2 bits (19), Expect = 0.018
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 854 tgcaactgcggcaccagctgcggctgc 880
||||| ||||||||||||||| |||||
Sbjct: 224 tgcaagtgcggcaccagctgcagctgc 250
>gb|CN819163.1|CN819163 HRO4468_E07_I14ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_E07_I14, mRNA sequence
Length = 562
Score = 38.2 bits (19), Expect = 0.018
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 854 tgcaactgcggcaccagctgcggctgc 880
||||| ||||||||||||||| |||||
Sbjct: 204 tgcaagtgcggcaccagctgcagctgc 230
>gb|CN815393.1|CN815393 HRO4509_B08_C15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_B08_C15, mRNA sequence
Length = 813
Score = 36.2 bits (18), Expect = 0.069
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 870 gctgcggctgctcctgct 887
||||||||||||||||||
Sbjct: 116 gctgcggctgctcctgct 99
>gb|CN819958.1|CN819958 HRO4409_B10_C19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4409_B10_C19, mRNA
sequence
Length = 727
Score = 36.2 bits (18), Expect = 0.069
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 997 ccgccattgttccttcct 1014
||||||||||||||||||
Sbjct: 178 ccgccattgttccttcct 161
>gb|CN821070.1|CN821070 HRO4427_B10_D19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_B10_D19, mRNA
sequence
Length = 668
Score = 36.2 bits (18), Expect = 0.069
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 997 ccgccattgttccttcct 1014
||||||||||||||||||
Sbjct: 139 ccgccattgttccttcct 122
>gb|CN814796.1|CN814796 HRO4502_E12_I24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_E12_I24, mRNA sequence
Length = 771
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 870 gctgcggctgctcctgc 886
|||||||||||||||||
Sbjct: 105 gctgcggctgctcctgc 121
>gb|CN819667.1|CN819667 HRO4402_G07_M14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G07_M14, mRNA
sequence
Length = 393
Score = 34.2 bits (17), Expect = 0.27
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 268 atctacaactactgcgccgac 288
||||||||||||||| |||||
Sbjct: 121 atctacaactactgcaccgac 141
>gb|CN821041.1|CN821041 HRO4422_H04_O08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_H04_O08, mRNA
sequence
Length = 777
Score = 34.2 bits (17), Expect = 0.27
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 873 gcggctgctcctgctgc 889
|||||||||||||||||
Sbjct: 686 gcggctgctcctgctgc 670
>gb|CN821226.1|CN821226 HRO4428_H09_P18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_H09_P18, mRNA
sequence
Length = 425
Score = 34.2 bits (17), Expect = 0.27
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 268 atctacaactactgcgccgac 288
||||||||||||||| |||||
Sbjct: 165 atctacaactactgcaccgac 185
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3384
Number of Sequences: 8143
Number of extensions: 3384
Number of successful extensions: 977
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 57
length of query: 1191
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1175
effective length of database: 4,572,175
effective search space: 5372305625
effective search space used: 5372305625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)