BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131572.2.6
         (1100 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN814789.1|CN814789  HRO4502_E05_I10ZS5 Lib AA071E1X Aven...    56   7e-008
gb|CN816425.1|CN816425  HRO4520_F02_L04ZS5 Lib AA071E1X Aven...    56   7e-008
gb|CN821053.1|CN821053  HRO4427_A04_B07ZS5 Lib AA069E1X Aven...    56   7e-008
gb|CN815034.1|CN815034  HRO4505_B06_C11ZS5 Lib AA071E1X Aven...    50   4e-006
gb|CN815850.1|CN815850  HRO4511_B09_D17ZS5 Lib AA071E1X Aven...    50   4e-006
gb|CN816873.1|CN816873  HRO4525_G05_M09ZS5 Lib AA071E1X Aven...    50   4e-006
gb|CN820644.1|CN820644  HRO4415_G07_N13ZS5 Lib AA069E1X Aven...    34   0.25 
gb|CN821220.1|CN821220  HRO4428_H02_P04ZS5 Lib AA069E1X Aven...    34   0.25 
>gb|CN814789.1|CN814789 HRO4502_E05_I10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4502_E05_I10, mRNA sequence
          Length = 596

 Score = 56.0 bits (28), Expect = 7e-008
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                       
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcagcgaatacaagattctcaag 760
           ||||| || ||||||||||||||||  |||||||||||||| || || || ||| |||||
Sbjct: 357 gaaaatgactggcgtcagctcttcatgaaagcagggttcagtgactataaaattgtcaag 298

                                           
Query: 761 gaatttggaactcgtgttgccttcgaagtcta 792
            |||| ||| | || | || ||||||||||||
Sbjct: 297 aaattaggagcacgaggtgtcttcgaagtcta 266

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 498 tgctaaagcttgtgctgcaccac 520
           |||| ||||||||||||||||||
Sbjct: 566 tgctcaagcttgtgctgcaccac 544
>gb|CN816425.1|CN816425 HRO4520_F02_L04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4520_F02_L04, mRNA sequence
          Length = 538

 Score = 56.0 bits (28), Expect = 7e-008
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcagcgaatacaagattctcaag 760
           ||||| || ||||||||||||||||  |||||||||||||| || || || ||| |||||
Sbjct: 199 gaaaatgactggcgtcagctcttcatgaaagcagggttcagtgactataaaattgtcaag 258

                                           
Query: 761 gaatttggaactcgtgttgccttcgaagtcta 792
            |||| ||| | || | || ||||||||||||
Sbjct: 259 aaattaggagcacgaggtgtcttcgaagtcta 290
>gb|CN821053.1|CN821053 HRO4427_A04_B07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4427_A04_B07, mRNA
           sequence
          Length = 644

 Score = 56.0 bits (28), Expect = 7e-008
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcagcgaatacaagattctcaag 760
           ||||| || ||||||||||||||||  |||||||||||||| || || || ||| |||||
Sbjct: 303 gaaaatgactggcgtcagctcttcatgaaagcagggttcagtgactataaaattgtcaag 362

                                           
Query: 761 gaatttggaactcgtgttgccttcgaagtcta 792
            |||| ||| | || | || ||||||||||||
Sbjct: 363 aaattaggagcacgaggtgtcttcgaagtcta 394

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 498 tgctaaagcttgtgctgcaccac 520
           |||| ||||||||||||||||||
Sbjct: 94  tgctcaagcttgtgctgcaccac 116
>gb|CN815034.1|CN815034 HRO4505_B06_C11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4505_B06_C11, mRNA sequence
          Length = 629

 Score = 50.1 bits (25), Expect = 4e-006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcag 741
           ||||| || ||||||||||||||||  ||||||||||||||
Sbjct: 388 gaaaatgactggcgtcagctcttcatgaaagcagggttcag 428

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 498 tgctaaagcttgtgctgcaccac 520
           |||| ||||||||||||||||||
Sbjct: 179 tgctcaagcttgtgctgcaccac 201
>gb|CN815850.1|CN815850 HRO4511_B09_D17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4511_B09_D17, mRNA sequence
          Length = 621

 Score = 50.1 bits (25), Expect = 4e-006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcag 741
           ||||| || ||||||||||||||||  ||||||||||||||
Sbjct: 281 gaaaatgactggcgtcagctcttcatgaaagcagggttcag 321

 Score = 34.2 bits (17), Expect = 0.25
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 498 tgctaaagcttgtgctgcacc 518
           |||| ||||||||||||||||
Sbjct: 72  tgctcaagcttgtgctgcacc 92
>gb|CN816873.1|CN816873 HRO4525_G05_M09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4525_G05_M09, mRNA sequence
          Length = 662

 Score = 50.1 bits (25), Expect = 4e-006
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcag 741
           ||||| || ||||||||||||||||  ||||||||||||||
Sbjct: 335 gaaaatgactggcgtcagctcttcatgaaagcagggttcag 375

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 498 tgctaaagcttgtgctgcaccac 520
           |||| ||||||||||||||||||
Sbjct: 126 tgctcaagcttgtgctgcaccac 148
>gb|CN820644.1|CN820644 HRO4415_G07_N13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4415_G07_N13, mRNA
           sequence
          Length = 614

 Score = 34.2 bits (17), Expect = 0.25
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 720 tcttcaccaaagcagggttca 740
           |||||||||||||||| ||||
Sbjct: 234 tcttcaccaaagcaggattca 254
>gb|CN821220.1|CN821220 HRO4428_H02_P04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
           leaf Avena sativa cDNA clone HRO4428_H02_P04, mRNA
           sequence
          Length = 594

 Score = 34.2 bits (17), Expect = 0.25
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 468 tcagtttcattccacct 484
           |||||||||||||||||
Sbjct: 30  tcagtttcattccacct 14
  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2687
Number of Sequences: 8143
Number of extensions: 2687
Number of successful extensions: 830
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 18
length of query: 1100
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1084
effective length of database: 4,572,175
effective search space: 4956237700
effective search space used: 4956237700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)