BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131572.2.6
(1100 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814789.1|CN814789 HRO4502_E05_I10ZS5 Lib AA071E1X Aven... 56 7e-008
gb|CN816425.1|CN816425 HRO4520_F02_L04ZS5 Lib AA071E1X Aven... 56 7e-008
gb|CN821053.1|CN821053 HRO4427_A04_B07ZS5 Lib AA069E1X Aven... 56 7e-008
gb|CN815034.1|CN815034 HRO4505_B06_C11ZS5 Lib AA071E1X Aven... 50 4e-006
gb|CN815850.1|CN815850 HRO4511_B09_D17ZS5 Lib AA071E1X Aven... 50 4e-006
gb|CN816873.1|CN816873 HRO4525_G05_M09ZS5 Lib AA071E1X Aven... 50 4e-006
gb|CN820644.1|CN820644 HRO4415_G07_N13ZS5 Lib AA069E1X Aven... 34 0.25
gb|CN821220.1|CN821220 HRO4428_H02_P04ZS5 Lib AA069E1X Aven... 34 0.25
>gb|CN814789.1|CN814789 HRO4502_E05_I10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_E05_I10, mRNA sequence
Length = 596
Score = 56.0 bits (28), Expect = 7e-008
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcagcgaatacaagattctcaag 760
||||| || |||||||||||||||| |||||||||||||| || || || ||| |||||
Sbjct: 357 gaaaatgactggcgtcagctcttcatgaaagcagggttcagtgactataaaattgtcaag 298
Query: 761 gaatttggaactcgtgttgccttcgaagtcta 792
|||| ||| | || | || ||||||||||||
Sbjct: 297 aaattaggagcacgaggtgtcttcgaagtcta 266
Score = 38.2 bits (19), Expect = 0.016
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 498 tgctaaagcttgtgctgcaccac 520
|||| ||||||||||||||||||
Sbjct: 566 tgctcaagcttgtgctgcaccac 544
>gb|CN816425.1|CN816425 HRO4520_F02_L04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_F02_L04, mRNA sequence
Length = 538
Score = 56.0 bits (28), Expect = 7e-008
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcagcgaatacaagattctcaag 760
||||| || |||||||||||||||| |||||||||||||| || || || ||| |||||
Sbjct: 199 gaaaatgactggcgtcagctcttcatgaaagcagggttcagtgactataaaattgtcaag 258
Query: 761 gaatttggaactcgtgttgccttcgaagtcta 792
|||| ||| | || | || ||||||||||||
Sbjct: 259 aaattaggagcacgaggtgtcttcgaagtcta 290
>gb|CN821053.1|CN821053 HRO4427_A04_B07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_A04_B07, mRNA
sequence
Length = 644
Score = 56.0 bits (28), Expect = 7e-008
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcagcgaatacaagattctcaag 760
||||| || |||||||||||||||| |||||||||||||| || || || ||| |||||
Sbjct: 303 gaaaatgactggcgtcagctcttcatgaaagcagggttcagtgactataaaattgtcaag 362
Query: 761 gaatttggaactcgtgttgccttcgaagtcta 792
|||| ||| | || | || ||||||||||||
Sbjct: 363 aaattaggagcacgaggtgtcttcgaagtcta 394
Score = 38.2 bits (19), Expect = 0.016
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 498 tgctaaagcttgtgctgcaccac 520
|||| ||||||||||||||||||
Sbjct: 94 tgctcaagcttgtgctgcaccac 116
>gb|CN815034.1|CN815034 HRO4505_B06_C11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_B06_C11, mRNA sequence
Length = 629
Score = 50.1 bits (25), Expect = 4e-006
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcag 741
||||| || |||||||||||||||| ||||||||||||||
Sbjct: 388 gaaaatgactggcgtcagctcttcatgaaagcagggttcag 428
Score = 38.2 bits (19), Expect = 0.016
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 498 tgctaaagcttgtgctgcaccac 520
|||| ||||||||||||||||||
Sbjct: 179 tgctcaagcttgtgctgcaccac 201
>gb|CN815850.1|CN815850 HRO4511_B09_D17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_B09_D17, mRNA sequence
Length = 621
Score = 50.1 bits (25), Expect = 4e-006
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcag 741
||||| || |||||||||||||||| ||||||||||||||
Sbjct: 281 gaaaatgactggcgtcagctcttcatgaaagcagggttcag 321
Score = 34.2 bits (17), Expect = 0.25
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 498 tgctaaagcttgtgctgcacc 518
|||| ||||||||||||||||
Sbjct: 72 tgctcaagcttgtgctgcacc 92
>gb|CN816873.1|CN816873 HRO4525_G05_M09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_G05_M09, mRNA sequence
Length = 662
Score = 50.1 bits (25), Expect = 4e-006
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 701 gaaaaagaatggcgtcagctcttcaccaaagcagggttcag 741
||||| || |||||||||||||||| ||||||||||||||
Sbjct: 335 gaaaatgactggcgtcagctcttcatgaaagcagggttcag 375
Score = 38.2 bits (19), Expect = 0.016
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 498 tgctaaagcttgtgctgcaccac 520
|||| ||||||||||||||||||
Sbjct: 126 tgctcaagcttgtgctgcaccac 148
>gb|CN820644.1|CN820644 HRO4415_G07_N13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_G07_N13, mRNA
sequence
Length = 614
Score = 34.2 bits (17), Expect = 0.25
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 720 tcttcaccaaagcagggttca 740
|||||||||||||||| ||||
Sbjct: 234 tcttcaccaaagcaggattca 254
>gb|CN821220.1|CN821220 HRO4428_H02_P04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_H02_P04, mRNA
sequence
Length = 594
Score = 34.2 bits (17), Expect = 0.25
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 468 tcagtttcattccacct 484
|||||||||||||||||
Sbjct: 30 tcagtttcattccacct 14
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2687
Number of Sequences: 8143
Number of extensions: 2687
Number of successful extensions: 830
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 18
length of query: 1100
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1084
effective length of database: 4,572,175
effective search space: 4956237700
effective search space used: 4956237700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)