BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131572.2.3
(1521 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 46 9e-005
gb|CN814789.1|CN814789 HRO4502_E05_I10ZS5 Lib AA071E1X Aven... 38 0.022
gb|CN815034.1|CN815034 HRO4505_B06_C11ZS5 Lib AA071E1X Aven... 38 0.022
gb|CN816873.1|CN816873 HRO4525_G05_M09ZS5 Lib AA071E1X Aven... 38 0.022
gb|CN820722.1|CN820722 HRO4416_H02_P04ZS5 Lib AA069E1X Aven... 38 0.022
gb|CN821053.1|CN821053 HRO4427_A04_B07ZS5 Lib AA069E1X Aven... 38 0.022
gb|CN820644.1|CN820644 HRO4415_G07_N13ZS5 Lib AA069E1X Aven... 36 0.088
gb|CN815850.1|CN815850 HRO4511_B09_D17ZS5 Lib AA071E1X Aven... 34 0.35
gb|CN816425.1|CN816425 HRO4520_F02_L04ZS5 Lib AA071E1X Aven... 34 0.35
gb|CN816556.1|CN816556 HRO4522_B02_C04ZS5 Lib AA071E1X Aven... 34 0.35
gb|CN821220.1|CN821220 HRO4428_H02_P04ZS5 Lib AA069E1X Aven... 34 0.35
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 46.1 bits (23), Expect = 9e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgctcga 1
>gb|CN814789.1|CN814789 HRO4502_E05_I10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_E05_I10, mRNA sequence
Length = 596
Score = 38.2 bits (19), Expect = 0.022
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 628 gtggtgcagcacaagctttagca 650
|||||||||||||||||| ||||
Sbjct: 544 gtggtgcagcacaagcttgagca 566
Score = 34.2 bits (17), Expect = 0.35
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 407 ctgaaccctgctttggtgaagagct 431
|||||||||||||| |||||||||
Sbjct: 317 ctgaaccctgctttcatgaagagct 341
>gb|CN815034.1|CN815034 HRO4505_B06_C11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_B06_C11, mRNA sequence
Length = 629
Score = 38.2 bits (19), Expect = 0.022
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 628 gtggtgcagcacaagctttagca 650
|||||||||||||||||| ||||
Sbjct: 201 gtggtgcagcacaagcttgagca 179
Score = 34.2 bits (17), Expect = 0.35
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 407 ctgaaccctgctttggtgaagagct 431
|||||||||||||| |||||||||
Sbjct: 428 ctgaaccctgctttcatgaagagct 404
>gb|CN816873.1|CN816873 HRO4525_G05_M09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_G05_M09, mRNA sequence
Length = 662
Score = 38.2 bits (19), Expect = 0.022
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 628 gtggtgcagcacaagctttagca 650
|||||||||||||||||| ||||
Sbjct: 148 gtggtgcagcacaagcttgagca 126
Score = 34.2 bits (17), Expect = 0.35
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 407 ctgaaccctgctttggtgaagagct 431
|||||||||||||| |||||||||
Sbjct: 375 ctgaaccctgctttcatgaagagct 351
>gb|CN820722.1|CN820722 HRO4416_H02_P04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_H02_P04, mRNA
sequence
Length = 563
Score = 38.2 bits (19), Expect = 0.022
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 303 catacatatatgtatgtaa 321
|||||||||||||||||||
Sbjct: 540 catacatatatgtatgtaa 522
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 302 acatacatatatgtatg 318
|||||||||||||||||
Sbjct: 524 acatacatatatgtatg 540
>gb|CN821053.1|CN821053 HRO4427_A04_B07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_A04_B07, mRNA
sequence
Length = 644
Score = 38.2 bits (19), Expect = 0.022
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 628 gtggtgcagcacaagctttagca 650
|||||||||||||||||| ||||
Sbjct: 116 gtggtgcagcacaagcttgagca 94
Score = 34.2 bits (17), Expect = 0.35
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 407 ctgaaccctgctttggtgaagagct 431
|||||||||||||| |||||||||
Sbjct: 343 ctgaaccctgctttcatgaagagct 319
>gb|CN820644.1|CN820644 HRO4415_G07_N13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_G07_N13, mRNA
sequence
Length = 614
Score = 36.2 bits (18), Expect = 0.088
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 408 tgaaccctgctttggtgaagagctcg 433
|||| |||||||||||||||| ||||
Sbjct: 254 tgaatcctgctttggtgaagatctcg 229
>gb|CN815850.1|CN815850 HRO4511_B09_D17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_B09_D17, mRNA sequence
Length = 621
Score = 34.2 bits (17), Expect = 0.35
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 407 ctgaaccctgctttggtgaagagct 431
|||||||||||||| |||||||||
Sbjct: 321 ctgaaccctgctttcatgaagagct 297
Score = 34.2 bits (17), Expect = 0.35
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 630 ggtgcagcacaagctttagca 650
|||||||||||||||| ||||
Sbjct: 92 ggtgcagcacaagcttgagca 72
>gb|CN816425.1|CN816425 HRO4520_F02_L04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_F02_L04, mRNA sequence
Length = 538
Score = 34.2 bits (17), Expect = 0.35
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 407 ctgaaccctgctttggtgaagagct 431
|||||||||||||| |||||||||
Sbjct: 239 ctgaaccctgctttcatgaagagct 215
>gb|CN816556.1|CN816556 HRO4522_B02_C04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_B02_C04, mRNA sequence
Length = 446
Score = 34.2 bits (17), Expect = 0.35
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 302 acatacatatatgtatgtaaatatatatgtata 334
|||||||||||| ||| || |||||||| ||||
Sbjct: 357 acatacatatatatatatatatatatatatata 389
>gb|CN821220.1|CN821220 HRO4428_H02_P04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_H02_P04, mRNA
sequence
Length = 594
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 664 aggtggaatgaaactga 680
|||||||||||||||||
Sbjct: 14 aggtggaatgaaactga 30
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3856
Number of Sequences: 8143
Number of extensions: 3856
Number of successful extensions: 1102
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1074
Number of HSP's gapped (non-prelim): 28
length of query: 1521
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1504
effective length of database: 4,564,032
effective search space: 6864304128
effective search space used: 6864304128
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)