BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.3
(622 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819665.1|CN819665 HRO4402_G05_M10ZS5 Lib AA069E1X Aven... 98 1e-020
gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Aven... 98 1e-020
>gb|CN819665.1|CN819665 HRO4402_G05_M10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G05_M10, mRNA
sequence
Length = 632
Score = 97.6 bits (49), Expect = 1e-020
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 395 caaaatttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcag 454
|||| ||||||||||||||||| | |||||| ||||||||||||||| |||||| |||||
Sbjct: 329 caaagtttttgggataagggtacgttggatataaggtcttcagtatgcttatcagatcag 270
Query: 455 caacttttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaag 514
|||| |||| |||||||| ||||| ||||||||||| |||| ||||| || |
Sbjct: 269 aggctttaattggtgaagaactgcatatgtagcgtccagacgcctctgcattttcatatg 210
Query: 515 ccagaagaagagcgtcagcaacatcacgaacatccac 551
||| ||||| ||| || |||||||| |||||||||||
Sbjct: 209 ccaaaagaatagcatcggcaacatctcgaacatccac 173
Score = 79.8 bits (40), Expect = 3e-015
Identities = 94/112 (83%)
Strand = Plus / Minus
Query: 260 tggatgttcaattcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggatt 319
|||||| ||| ||||||| |||| ||||| ||||||| || || |||| | ||||| ||
Sbjct: 464 tggatgctcagttcaggacgccagatgctctgtaggactcgacgctgtccctgagggttt 405
Query: 320 cctctataggcttgaagctccaccccagcttctgcagtttctcagagctgta 371
||||||| ||| ||||| |||||||||| ||||| ||||||||||| |||||
Sbjct: 404 cctctatgggcctgaaggtccaccccagtttctgaagtttctcagaactgta 353
>gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D02_G03, mRNA
sequence
Length = 704
Score = 97.6 bits (49), Expect = 1e-020
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 395 caaaatttttgggataagggtaagatggatacaaggtcttcagtatgtttatcatatcag 454
|||| ||||||||||||||||| | |||||| ||||||||||||||| |||||| |||||
Sbjct: 573 caaagtttttgggataagggtacgttggatataaggtcttcagtatgcttatcagatcag 514
Query: 455 caacttttattgcatgtgaactgcagatgtatcgtccagacgcttctggcttttcgtaag 514
|||| |||| |||||||| ||||| ||||||||||| |||| ||||| || |
Sbjct: 513 aggctttaattggtgaagaactgcatatgtagcgtccagacgcctctgcattttcatatg 454
Query: 515 ccagaagaagagcgtcagcaacatcacgaacatccac 551
||| ||||| ||| || |||||||| |||||||||||
Sbjct: 453 ccaaaagaatagcatcggcaacatctcgaacatccac 417
Score = 73.8 bits (37), Expect = 2e-013
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 271 ttcaggatgccaaatgctttgtaggattcaacagtgtcgcggagggattcctctataggc 330
||||||| |||| ||||| ||||||| || || |||| | ||||| ||||||||| |||
Sbjct: 697 ttcaggacgccagatgctctgtaggactcgacgctgtccctgagggtttcctctatgggc 638
Query: 331 ttgaagctccaccccagcttctgcagtttctcagagctgta 371
||||| |||||||||| ||||| ||||||||||| |||||
Sbjct: 637 ctgaaggtccaccccagtttctgaagtttctcagaactgta 597
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1601
Number of Sequences: 8143
Number of extensions: 1601
Number of successful extensions: 469
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 6
length of query: 622
length of database: 4,702,463
effective HSP length: 16
effective length of query: 606
effective length of database: 4,572,175
effective search space: 2770738050
effective search space used: 2770738050
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)