BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131555.2.1
(1236 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Aven... 117 2e-026
gb|CN819665.1|CN819665 HRO4402_G05_M10ZS5 Lib AA069E1X Aven... 82 1e-015
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 40 0.005
gb|CN820547.1|CN820547 HRO4413_F05_K09ZS5 Lib AA069E1X Aven... 34 0.28
>gb|CN820523.1|CN820523 HRO4413_D02_G03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D02_G03, mRNA
sequence
Length = 704
Score = 117 bits (59), Expect = 2e-026
Identities = 245/307 (79%)
Strand = Plus / Plus
Query: 351 tcatagctcccgctgtaacaggtacaaccaatgtgttaaaggcttgctatgaggcaaaag 410
|||||||||| || |||||||| ||| |||| ||| ||||||||||| ||||||||||
Sbjct: 37 tcatagctcctgccgtaacaggcacactgaatgagttgaaggcttgctacgaggcaaaag 96
Query: 411 ttaggcgagttgtggtggtgtcttcatgtggagctgtgtatgctaatcctatttatccga 470
||| ||||||||| ||||||||||| | |||||||| |||||||| | || |
Sbjct: 97 ttaagcgagttgtcgtggtgtcttctgtttctgctgtgtacaataatcctaactggccta 156
Query: 471 agggtaaggtgtttgatgaagactgctggtcagatgaggattactgcaggaagaaggagg 530
|||| || || || ||||||||| ||||||||| ||||| |||||| ||||| |||
Sbjct: 157 agggcaaagtcttggatgaagacaactggtcagacgaggacctctgcagaaagaataagg 216
Query: 531 attggtatttagtttccaaaacactgtcggaacgagaagctcttgcttttgcagcaaaaa 590
|||||||| |||||||||| || | || || || ||| |||||| |||||||||||
Sbjct: 217 attggtatgacctttccaaaacgcttgcagagcgtgaggcttttgcttatgcagcaaaaa 276
Query: 591 cagggctggacgttgtaactgtttgtccgtcattagtatttggacccttgatgcagccta 650
| || ||||| |||||||| |||| || ||||||||| |||| |||||| ||||| |||
Sbjct: 277 ctggactggatattgtaactatttgcccatcattagtaattggccccttgctgcagtcta 336
Query: 651 cagtaaa 657
|||||||
Sbjct: 337 cagtaaa 343
Score = 73.8 bits (37), Expect = 3e-013
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 908 tacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctc 967
||||| ||||||||||| ||||| |||||||||||||||| ||| ||||||||| |||||
Sbjct: 597 tacagttctgagaaacttcagaaactggggtggaccttcaggcccatagaggaaaccctc 656
Query: 968 cgtgacactgttgaatcctacaaggcatttggcatcctgaa 1008
| |||| || || ||||||| |||| |||| |||||||
Sbjct: 657 agggacagcgtcgagtcctacagagcatctggcgtcctgaa 697
Score = 73.8 bits (37), Expect = 3e-013
Identities = 127/157 (80%)
Strand = Plus / Plus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| |||| |||||||| |||||| ||||| || | || ||||| |||| ||||||
Sbjct: 417 gtggatgttcgagatgttgccgatgctattcttttggcatatgaaaatgcagaggcgtct 476
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||| ||||| |||||||| |||| ||| |||||| |||||| ||||||||||
Sbjct: 477 ggacgctacatatgcagttcttcaccaattaaagcctctgatctgataagcatactgaag 536
Query: 848 accatgtatccgtcttacccttatcccaaaaattttg 884
||| | ||||| | ||||||||||||||||| ||||
Sbjct: 537 accttatatccaacgtacccttatcccaaaaactttg 573
>gb|CN819665.1|CN819665 HRO4402_G05_M10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_G05_M10, mRNA
sequence
Length = 632
Score = 81.8 bits (41), Expect = 1e-015
Identities = 95/113 (84%)
Strand = Plus / Plus
Query: 908 tacagctctgagaaactgcagaagctggggtggaccttcaagcctatagaggaatccctc 967
||||| ||||||||||| ||||| |||||||||||||||| ||| ||||||||| |||||
Sbjct: 353 tacagttctgagaaacttcagaaactggggtggaccttcaggcccatagaggaaaccctc 412
Query: 968 cgtgacactgttgaatcctacaaggcatttggcatcctgaattgaacatccaa 1020
| |||| || || ||||||| |||| |||| ||||||| ||| |||||||
Sbjct: 413 agggacagcgtcgagtcctacagagcatctggcgtcctgaactgagcatccaa 465
Score = 73.8 bits (37), Expect = 3e-013
Identities = 127/157 (80%)
Strand = Plus / Plus
Query: 728 gtggatattcgtgatgttgctgatgctcttcttctgacttacgaaaagccagaagcgtct 787
|||||| |||| |||||||| |||||| ||||| || | || ||||| |||| ||||||
Sbjct: 173 gtggatgttcgagatgttgccgatgctattcttttggcatatgaaaatgcagaggcgtct 232
Query: 788 ggacgatacatctgcagttcacatgcaataaaaatttctgatatgataaacatactgaag 847
||||| ||||| |||||||| |||| ||| |||||| |||||| ||||||||||
Sbjct: 233 ggacgctacatatgcagttcttcaccaattaaagcctctgatctgataagcatactgaag 292
Query: 848 accatgtatccgtcttacccttatcccaaaaattttg 884
||| | ||||| | ||||||||||||||||| ||||
Sbjct: 293 accttatatccaacgtacccttatcccaaaaactttg 329
Score = 73.8 bits (37), Expect = 3e-013
Identities = 73/85 (85%)
Strand = Plus / Plus
Query: 573 ttgcttttgcagcaaaaacagggctggacgttgtaactgtttgtccgtcattagtatttg 632
|||||| |||||||||||| || ||||| |||||||| |||| || ||||||||| |||
Sbjct: 15 ttgcttatgcagcaaaaactggactggatattgtaactatttgcccatcattagtaattg 74
Query: 633 gacccttgatgcagcctacagtaaa 657
| |||||| ||||| ||||||||||
Sbjct: 75 gccccttgctgcagtctacagtaaa 99
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1216 tacctgcccgggcggccgct 1235
||||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgct 4
>gb|CN820547.1|CN820547 HRO4413_F05_K09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_F05_K09, mRNA
sequence
Length = 703
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 112 gctggtgaagctcctcc 128
|||||||||||||||||
Sbjct: 418 gctggtgaagctcctcc 402
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3262
Number of Sequences: 8143
Number of extensions: 3262
Number of successful extensions: 843
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 11
length of query: 1236
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1220
effective length of database: 4,572,175
effective search space: 5578053500
effective search space used: 5578053500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)