BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131554.2.6
(761 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821564.1|CN821564 HRO4426_G05_M10ZS5 Lib AA069E1X Aven... 452 e-127
gb|CN814783.1|CN814783 HRO4502_D11_G22ZS5 Lib AA071E1X Aven... 406 e-113
gb|CN819743.1|CN819743 HRO4403_F03_L05ZS5 Lib AA069E1X Aven... 276 3e-074
gb|CN817920.1|CN817920 HRO4459_C12_E23ZS5 Lib AA070E1X Aven... 34 0.17
>gb|CN821564.1|CN821564 HRO4426_G05_M10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_G05_M10, mRNA
sequence
Length = 477
Score = 452 bits (228), Expect = e-127
Identities = 279/296 (94%)
Strand = Plus / Minus
Query: 372 ctagccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccat 431
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 306 ctagcctccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacgtccat 247
Query: 432 ggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgtt 491
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 246 ggcggtgacagtcttccggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgtt 187
Query: 492 ctccagaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgctt 551
||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ctcaaggaagatcttgaggacgccgcgggtctcctcgtagatgagcccggagatgcgctt 127
Query: 552 gacgccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgtc 611
|||||||||||||| |||||||| |||||||||||||| |||||||||||||| |||||
Sbjct: 126 cacgccgcccctcctcgccagccttcggatcgccggcttagtgatgccctggatattgtc 67
Query: 612 gcgcaggaccttgcggtggcgcttggcgccgcccttgcccagacccttgccgccct 667
||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 66 gcggaggaccttccggtggcgcttggcgccgcccttgcccagccccttgccgccct 11
>gb|CN814783.1|CN814783 HRO4502_D11_G22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_D11_G22, mRNA sequence
Length = 479
Score = 406 bits (205), Expect = e-113
Identities = 241/253 (95%)
Strand = Plus / Minus
Query: 371 cctagccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatcca 430
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 278 cctagccgccgaagccgtagagggtgcggccctggcgcttgagcgcgtagacgacgtcca 219
Query: 431 tggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgt 490
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 218 tggcggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgt 159
Query: 491 tctccagaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgct 550
|||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 158 tctcgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccctgagatgcgct 99
Query: 551 tgacgccgcccctcctagccagcctccggatcgccggcttggtgatgccctggatgttgt 610
| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 98 tcacgccgcccctccgcgccagcctccggatcgccggcttcgtgatgccctggatgttgt 39
Query: 611 cgcgcaggacctt 623
||||||| |||||
Sbjct: 38 cgcgcagcacctt 26
>gb|CN819743.1|CN819743 HRO4403_F03_L05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_F03_L05, mRNA
sequence
Length = 343
Score = 276 bits (139), Expect = 3e-074
Identities = 175/187 (93%)
Strand = Plus / Minus
Query: 374 agccgccgaagccgtagagggtgcggccctgtcgcttgagcgcgtagacgacatccatgg 433
|||| |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||
Sbjct: 221 agcctccgaagccgtagagggtgcgtccctggcgcttgagtgcatagacgacgtccatgg 162
Query: 434 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcacggatgacgttct 493
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 161 cggtgacggtcttgcggcgggcgtgctcggtgtaggtgacggcgtcgcggatgacgttct 102
Query: 494 ccagaaagatcttgagcacaccgcgggtctcctcgtagatgagcccggagatgcgcttga 553
| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct: 101 cgaggaagatcttgagcacgccgcgggtctcctcgtagatgagccccgagatgcgcttca 42
Query: 554 cgccgcc 560
|||||||
Sbjct: 41 cgccgcc 35
>gb|CN817920.1|CN817920 HRO4459_C12_E23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_C12_E23, mRNA sequence
Length = 572
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 655 cccttgccgcccttgcc 671
|||||||||||||||||
Sbjct: 85 cccttgccgcccttgcc 69
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1937
Number of Sequences: 8143
Number of extensions: 1937
Number of successful extensions: 450
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 6
length of query: 761
length of database: 4,702,463
effective HSP length: 16
effective length of query: 745
effective length of database: 4,572,175
effective search space: 3406270375
effective search space used: 3406270375
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)