BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.8
(708 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814648.1|CN814648 HRO4501_A03_A05ZS5 Lib AA071E1X Aven... 94 2e-019
gb|CN815018.1|CN815018 HRO4505_A01_A01ZS5 Lib AA071E1X Aven... 94 2e-019
gb|CN815299.1|CN815299 HRO4508_B07_D14ZS5 Lib AA071E1X Aven... 94 2e-019
gb|CN816820.1|CN816820 HRO4525_B10_C19ZS5 Lib AA071E1X Aven... 94 2e-019
gb|CN820796.1|CN820796 HRO4420_A02_B04ZS5 Lib AA069E1X Aven... 86 5e-017
gb|CN821631.1|CN821631 HRO4408_E02_J04ZS5 Lib AA069E1X Aven... 56 4e-008
gb|CN820713.1|CN820713 HRO4416_G01_N02ZS5 Lib AA069E1X Aven... 42 7e-004
>gb|CN814648.1|CN814648 HRO4501_A03_A05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_A03_A05, mRNA sequence
Length = 391
Score = 93.7 bits (47), Expect = 2e-019
Identities = 107/127 (84%)
Strand = Plus / Minus
Query: 368 tcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatga 427
|||| |||||||| ||||| || || ||| |||||| |||||| ||||| || ||||
Sbjct: 163 tctttggatgcttcgcctcagcatgttccttgcactttgcttcagaggtggtgcagatga 104
Query: 428 atgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgagctggc 487
|||| |||||||| | |||||||||||| |||||||||||||||||| ||||||||| |
Sbjct: 103 atgtctgcatgcatatcttgcactggatgttcatggccttcttgttggcctcgagctgac 44
Query: 488 tcccctt 494
|||||||
Sbjct: 43 tcccctt 37
>gb|CN815018.1|CN815018 HRO4505_A01_A01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_A01_A01, mRNA sequence
Length = 338
Score = 93.7 bits (47), Expect = 2e-019
Identities = 107/127 (84%)
Strand = Plus / Minus
Query: 368 tcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatga 427
|||| |||||||| ||||| || || ||| |||||| |||||| ||||| || ||||
Sbjct: 130 tctttggatgcttcgcctcagcatgttccttgcactttgcttcagaggtggtgcagatga 71
Query: 428 atgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgagctggc 487
|||| |||||||| | |||||||||||| |||||||||||||||||| ||||||||| |
Sbjct: 70 atgtctgcatgcatatcttgcactggatgttcatggccttcttgttggcctcgagctgac 11
Query: 488 tcccctt 494
|||||||
Sbjct: 10 tcccctt 4
>gb|CN815299.1|CN815299 HRO4508_B07_D14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_B07_D14, mRNA sequence
Length = 470
Score = 93.7 bits (47), Expect = 2e-019
Identities = 107/127 (84%)
Strand = Plus / Minus
Query: 368 tcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatga 427
|||| |||||||| ||||| || || ||| |||||| |||||| ||||| || ||||
Sbjct: 184 tctttggatgcttcgcctcagcatgttccttgcactttgcttcagaggtggtgcagatga 125
Query: 428 atgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgagctggc 487
|||| |||||||| | |||||||||||| |||||||||||||||||| ||||||||| |
Sbjct: 124 atgtctgcatgcatatcttgcactggatgttcatggccttcttgttggcctcgagctgac 65
Query: 488 tcccctt 494
|||||||
Sbjct: 64 tcccctt 58
>gb|CN816820.1|CN816820 HRO4525_B10_C19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_B10_C19, mRNA sequence
Length = 416
Score = 93.7 bits (47), Expect = 2e-019
Identities = 107/127 (84%)
Strand = Plus / Minus
Query: 368 tcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatga 427
|||| |||||||| ||||| || || ||| |||||| |||||| ||||| || ||||
Sbjct: 152 tctttggatgcttcgcctcagcatgttccttgcactttgcttcagaggtggtgcagatga 93
Query: 428 atgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgagctggc 487
|||| |||||||| | |||||||||||| |||||||||||||||||| ||||||||| |
Sbjct: 92 atgtctgcatgcatatcttgcactggatgttcatggccttcttgttggcctcgagctgac 33
Query: 488 tcccctt 494
|||||||
Sbjct: 32 tcccctt 26
>gb|CN820796.1|CN820796 HRO4420_A02_B04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_A02_B04, mRNA
sequence
Length = 417
Score = 85.7 bits (43), Expect = 5e-017
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 368 tcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatga 427
|||| |||||||| ||||| || || ||| |||||| |||||| ||||| || ||||
Sbjct: 138 tctttggatgcttcgcctcagcatgttccttgcactttgcttcagaggtggtgcagatga 79
Query: 428 atgtttgcatgcacactttgcactggatgctcatggccttcttgttggtctcgagctggc 487
|||| |||||||| | |||||||||||| |||||||||||||||||| || |||||| |
Sbjct: 78 atgtctgcatgcatatcttgcactggatgttcatggccttcttgttggcctagagctgac 19
Query: 488 tcccctt 494
|||||||
Sbjct: 18 tcccctt 12
>gb|CN821631.1|CN821631 HRO4408_E02_J04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_E02_J04, mRNA
sequence
Length = 357
Score = 56.0 bits (28), Expect = 4e-008
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 368 tcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatga 427
|||| |||||||| ||||| || || ||| |||||| |||||| ||||| || ||||
Sbjct: 114 tctttggatgcttcgcctcagcatgttccttgcactttgcttcagaggtggtgcagatga 55
Query: 428 atgtttgcatgcacactttgcactggatgctcatggccttcttg 471
|||| |||||||| | |||||||||||| |||||||||||||
Sbjct: 54 atgtctgcatgcatatcttgcactggatgtacatggccttcttg 11
>gb|CN820713.1|CN820713 HRO4416_G01_N02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_G01_N02, mRNA
sequence
Length = 454
Score = 42.1 bits (21), Expect = 7e-004
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 368 tcttgggatgcttggcctcggcgtgctcccggcacttcacttcagtcgtggtacacatga 427
|||| |||||||| ||||| || || ||| |||||| |||||| ||||| || ||||
Sbjct: 103 tctttggatgcttcgcctcagcatgttccttgcactttgcttcagaggtggtgcagatga 44
Query: 428 atgtttgcatgcacactttgcactggatg 456
|||| |||||||| | ||||||||||||
Sbjct: 43 atgtctgcatgcatatcttgcactggatg 15
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1579
Number of Sequences: 8143
Number of extensions: 1579
Number of successful extensions: 578
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 8
length of query: 708
length of database: 4,702,463
effective HSP length: 16
effective length of query: 692
effective length of database: 4,572,175
effective search space: 3163945100
effective search space used: 3163945100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)