BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.65
(673 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Aven... 462 e-130
gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Aven... 412 e-115
gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Aven... 408 e-114
gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Aven... 406 e-113
gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Aven... 394 e-110
gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Aven... 325 3e-089
gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Aven... 280 2e-075
gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Aven... 204 7e-053
gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Aven... 194 7e-050
gb|CN815591.1|CN815591 HRO4513_D04_G07ZS5 Lib AA071E1X Aven... 34 0.15
gb|CN820602.1|CN820602 HRO4415_C12_F23ZS5 Lib AA069E1X Aven... 34 0.15
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G09_N17, mRNA sequence
Length = 412
Score = 462 bits (233), Expect = e-130
Identities = 275/289 (95%)
Strand = Plus / Plus
Query: 247 agaaggccaagaagagcgtggagacgtacaagatctacatcttcaaggtgctgaagcagg 306
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 11 agaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctgaagcagg 70
Query: 307 tgcacccggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tgcacccggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacg 130
Query: 367 acatcttcgagaagctcgccggcgaggcggccaagctcgcccgctacaacaagaagccca 426
||||||| ||||| ||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct: 131 acatctttgagaaactcgctggcgaggccgccaagctggcgcgctacaacaagaagccca 190
Query: 427 ccatcacctcccgggagatccagacctccgtccgcctcgttctacccggcgagctcgcca 486
||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 191 ccatcacctcccgggagatccagacctccgtccgccttgtcctccccggcgagctcgcca 250
Query: 487 agcacgccgtctcggagggcaccaaggccgtcaccaagttcacctcgtc 535
|||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 251 agcacgccgtgtcagagggcaccaaggccgtcaccaagttcacctcgtc 299
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
sequence
Length = 454
Score = 412 bits (208), Expect = e-115
Identities = 253/268 (94%)
Strand = Plus / Plus
Query: 262 gcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcg 321
|||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 11 gcgtcgagacctacaagatctacatcttcaaggtcctcaagcaggtgcacccggacatcg 70
Query: 322 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 130
Query: 382 tcgccggcgaggcggccaagctcgcccgctacaacaagaagcccaccatcacctcccggg 441
|||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 131 tcgctggcgagtccgccaagctggcccgctacaacaagaagcccaccatcacctcccggg 190
Query: 442 agatccagacctccgtccgcctcgttctacccggcgagctcgccaagcacgccgtctcgg 501
||||||||||||||||||||||||| || || || ||||||||||||||||| ||||| |
Sbjct: 191 agatccagacctccgtccgcctcgtcctcccaggggagctcgccaagcacgctgtctctg 250
Query: 502 agggcaccaaggccgtcaccaagttcac 529
||||||||||||||||||| ||||||||
Sbjct: 251 agggcaccaaggccgtcacaaagttcac 278
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C01_F01, mRNA sequence
Length = 365
Score = 408 bits (206), Expect = e-114
Identities = 263/282 (93%)
Strand = Plus / Plus
Query: 245 gaagaaggccaagaagagcgtggagacgtacaagatctacatcttcaaggtgctgaagca 304
||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || |||||
Sbjct: 50 gaagaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtcctcaagca 109
Query: 305 ggtgcacccggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ggtgcacccggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaa 169
Query: 365 cgacatcttcgagaagctcgccggcgaggcggccaagctcgcccgctacaacaagaagcc 424
||||||||| ||||| ||||| |||||| | ||||||||||||||||| |||||||||||
Sbjct: 170 cgacatctttgagaaactcgctggcgagtctgccaagctcgcccgctataacaagaagcc 229
Query: 425 caccatcacctcccgggagatccagacctccgtccgcctcgttctacccggcgagctcgc 484
||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||
Sbjct: 230 caccatcacctcccgggagatccagacctccgtccgccttgtcctccccggcgagcttgc 289
Query: 485 caagcacgccgtctcggagggcaccaaggccgtcaccaagtt 526
||||||||| ||||| |||||||||||||| ||||| |||||
Sbjct: 290 caagcacgcggtctccgagggcaccaaggctgtcacaaagtt 331
>gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D06_H12, mRNA
sequence
Length = 415
Score = 406 bits (205), Expect = e-113
Identities = 265/285 (92%)
Strand = Plus / Plus
Query: 245 gaagaaggccaagaagagcgtggagacgtacaagatctacatcttcaaggtgctgaagca 304
||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct: 22 gaagaaggcaaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaagca 81
Query: 305 ggtgcacccggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaa 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 82 ggtgcacccggacatcggcatatcctccaaggccatgtccatcatgaactccttcattaa 141
Query: 365 cgacatcttcgagaagctcgccggcgaggcggccaagctcgcccgctacaacaagaagcc 424
||||||||| |||||||| || || ||| | ||||||||||| |||||||||||||||||
Sbjct: 142 cgacatctttgagaagcttgctggggagtctgccaagctcgctcgctacaacaagaagcc 201
Query: 425 caccatcacctcccgggagatccagacctccgtccgcctcgttctacccggcgagctcgc 484
||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 202 caccatcacctcccgggagatacagacctctgtccgcctcgtcctccccggcgagctcgc 261
Query: 485 caagcacgccgtctcggagggcaccaaggccgtcaccaagttcac 529
||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 262 caagcacgctgtctctgagggcaccaaggctgtcaccaagttcac 306
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_A08_B15, mRNA sequence
Length = 655
Score = 394 bits (199), Expect = e-110
Identities = 268/291 (92%)
Strand = Plus / Plus
Query: 245 gaagaaggccaagaagagcgtggagacgtacaagatctacatcttcaaggtgctgaagca 304
|||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 62 gaagaaagccaagaagagcgtagagacatacaagatctacatcttcaaggtcctgaagca 121
Query: 305 ggtgcacccggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaa 364
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ggtgcatcccgacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaa 181
Query: 365 cgacatcttcgagaagctcgccggcgaggcggccaagctcgcccgctacaacaagaagcc 424
||||||||||||||| ||||| |||||| |||| ||||| || | ||||||||||||||
Sbjct: 182 cgacatcttcgagaaactcgctggcgagtcggcaaagcttgcgaggtacaacaagaagcc 241
Query: 425 caccatcacctcccgggagatccagacctccgtccgcctcgttctacccggcgagctcgc 484
||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 242 caccatcacctcccgggagatccagacctccgtccgccttgtcctccccggggagctcgc 301
Query: 485 caagcacgccgtctcggagggcaccaaggccgtcaccaagttcacctcgtc 535
|||||| ||||| || |||||||||||||| ||||| ||||||||||||||
Sbjct: 302 caagcatgccgtgtccgagggcaccaaggctgtcacgaagttcacctcgtc 352
>gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_H02_P04, mRNA sequence
Length = 472
Score = 325 bits (164), Expect = 3e-089
Identities = 239/264 (90%)
Strand = Plus / Plus
Query: 266 ggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggacatcggcat 325
|||||| ||||||||||||||||||||||| || |||||||| ||||| |||||||||||
Sbjct: 10 ggagacctacaagatctacatcttcaaggtcctcaagcaggtccaccccgacatcggcat 69
Query: 326 ctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgc 385
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct: 70 ctcctccaaggccatgtccatcatgaactccttcatcaacgatatctttgagaagctggc 129
Query: 386 cggcgaggcggccaagctcgcccgctacaacaagaagcccaccatcacctcccgggagat 445
|||||| | ||||||||||| | ||||||||||||||||||||||||||| |||||||
Sbjct: 130 tggcgagtctgccaagctcgcgaggtacaacaagaagcccaccatcacctccagggagat 189
Query: 446 ccagacctccgtccgcctcgttctacccggcgagctcgccaagcacgccgtctcggaggg 505
|||||| || || || || || || || || ||||||||||||||||||||||| |||||
Sbjct: 190 ccagacttctgttcgtcttgtgcttccaggggagctcgccaagcacgccgtctctgaggg 249
Query: 506 caccaaggccgtcaccaagttcac 529
||||||||||||||||||||||||
Sbjct: 250 caccaaggccgtcaccaagttcac 273
>gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_C10_F20, mRNA sequence
Length = 360
Score = 280 bits (141), Expect = 2e-075
Identities = 192/209 (91%)
Strand = Plus / Plus
Query: 321 ggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaag 380
||||| |||||| |||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 11 ggcatatcctcctaggccatgtccatcatgaactccttcattaacgacatctttgagaag 70
Query: 381 ctcgccggcgaggcggccaagctcgcccgctacaacaagaagcccaccatcacctcccgg 440
|| || || ||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 71 cttgctggggagtctgccaagctcgctcgctacaacaagaagcccaccatcacctcccgg 130
Query: 441 gagatccagacctccgtccgcctcgttctacccggcgagctcgccaagcacgccgtctcg 500
||||| |||||||| ||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 131 gagatacagacctctgtccgcctcgtcctccccggcgagctcgccaagcacgctgtctct 190
Query: 501 gagggcaccaaggccgtcaccaagttcac 529
|||||||||||||| ||||||||||||||
Sbjct: 191 gagggcaccaaggctgtcaccaagttcac 219
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_F01_K01, mRNA sequence
Length = 361
Score = 204 bits (103), Expect = 7e-053
Identities = 133/143 (93%)
Strand = Plus / Plus
Query: 396 gccaagctcgcccgctacaacaagaagcccaccatcacctcccgggagatccagacctcc 455
||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 33 gccaagctcgcgaggtacaacaagaagcccaccatcacctccagggagatccagacctcc 92
Query: 456 gtccgcctcgttctacccggcgagctcgccaagcacgccgtctcggagggcaccaaggcc 515
||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 93 gtccgcctcgtcctccccggcgagctcgccaagcacgctgtctccgagggcaccaaggct 152
Query: 516 gtcaccaagttcacctcgtccta 538
||||||||||||||||| |||||
Sbjct: 153 gtcaccaagttcacctcttccta 175
>gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E01_I01, mRNA sequence
Length = 384
Score = 194 bits (98), Expect = 7e-050
Identities = 147/162 (90%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 371 cttcgagaagctcgccggcgaggcggccaagctcgcccgctacaacaagaagcccaccat 430
||||||||| || |||| ||| | |||||||||||||||| | |||||||||||||||
Sbjct: 11 cttcgagaaactttccggggagtccgccaagctcgcccgcttta-caagaagcccaccat 69
Query: 431 cacctcccgggagatccagacctccgtccgcctcgttctacccggcgagctcgccaagca 490
||||||| |||||||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct: 70 cacctccagggagatccagacctccgtccgcctcgtcctccccggggaactcgccaagca 129
Query: 491 cgccgtctcggagggcaccaaggccgtcaccaagttcacctc 532
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 130 cgccgtctctgagggcaccaaggccgtcaccaagttcacctc 171
>gb|CN815591.1|CN815591 HRO4513_D04_G07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4513_D04_G07, mRNA sequence
Length = 815
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1 ggcacgaggctgcattc 17
|||||||||||||||||
Sbjct: 2 ggcacgaggctgcattc 18
>gb|CN820602.1|CN820602 HRO4415_C12_F23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_C12_F23, mRNA
sequence
Length = 806
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1 ggcacgaggctgcattc 17
|||||||||||||||||
Sbjct: 2 ggcacgaggctgcattc 18
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2165
Number of Sequences: 8143
Number of extensions: 2165
Number of successful extensions: 617
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 17
length of query: 673
length of database: 4,702,463
effective HSP length: 16
effective length of query: 657
effective length of database: 4,572,175
effective search space: 3003918975
effective search space used: 3003918975
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)