BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.645
(1154 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815339.1|CN815339 HRO4508_F01_L02ZS5 Lib AA071E1X Aven... 155 1e-037
gb|CN816113.1|CN816113 HRO4517_B05_C09ZS5 Lib AA071E1X Aven... 72 1e-012
gb|CN821129.1|CN821129 HRO4427_G12_N23ZS5 Lib AA069E1X Aven... 72 1e-012
gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3... 68 2e-011
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 46 7e-005
gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Aven... 38 0.017
gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRK... 34 0.26
>gb|CN815339.1|CN815339 HRO4508_F01_L02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_F01_L02, mRNA sequence
Length = 525
Score = 155 bits (78), Expect = 1e-037
Identities = 291/362 (80%)
Strand = Plus / Minus
Query: 347 ttgtagtcgccatgaacctccatcaacttcccgagatcaaacttgggggccttgagtatc 406
|||||||| || || ||||||||||||||||| | ||| ||||| || | ||| || |||
Sbjct: 389 ttgtagtcaccgtgtacctccatcaacttcccaatatcgaactttggtgacttcaggatc 330
Query: 407 ttcaccttgcggatgaagacgttttgaagtgggaagatgctggaggtagacttctcaatc 466
|| |||||||||| | || ||||| |||||||| ||||| || || | |||||||||
Sbjct: 329 tttaccttgcggacatacacattttggagtgggaaaatgcttgaagttgccttctcaata 270
Query: 467 tctttgccaataacttccggaatgaacttagaaacaagttctttaaggtcacatgtagaa 526
||||| ||||| || || || || || || | ||| || || || | |||||| || |||
Sbjct: 269 tcttttccaatgacctcagggataaattttgcaaccagctccttcaagtcacaggttgaa 210
Query: 527 gcctggttgatcataatctcaaccatcttgcggcgaatctgccgaatctgggatgcctga 586
|| |||||| ||| ||||| |||||||| ||||||||||| | |||||| ||||||
Sbjct: 209 gcgtggttggccatgatctcgaccatcttccggcgaatctgtctgatctggctggcctga 150
Query: 587 gcatagcaggttctcttgacctggtttgggcgcctcttggtaaaaccaatgcagaacaaa 646
|||||||| || | ||| ||||||||||| || ||||| || || |||||||||||||
Sbjct: 149 gcatagcaagtacgcttcacctggtttggacgtctcttagtgaagccaatgcagaacagc 90
Query: 647 cgcagcatgtagttgtcggttgtcttgacatcaacatgggcttcaatcaatgtctgccac 706
|| |||||||| ||||| || ||||| |||||||||||||| ||||| | ||||||||||
Sbjct: 89 cggagcatgtaattgtcagtagtcttaacatcaacatgggcctcaattagtgtctgccac 30
Query: 707 tt 708
||
Sbjct: 29 tt 28
>gb|CN816113.1|CN816113 HRO4517_B05_C09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_B05_C09, mRNA sequence
Length = 846
Score = 71.9 bits (36), Expect = 1e-012
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 334 accaacgtcctctttgtagtcgccatgaacctccatcaacttcccgagatcaaacttggg 393
|||||| || || |||||||| ||||| |||||||| | |||||| ||||| ||||||||
Sbjct: 667 accaacatcttccttgtagtcaccatgcacctccatgagcttccccagatcgaacttggg 608
Query: 394 ggccttgagtatcttcaccttgcggatgaagacgttttgaagtgggaagatgctgg 449
||||| | |||||||||||||||| | ||||| || || |||||||||||||
Sbjct: 607 tgccttcaagatcttcaccttgcggacatacacgttctggagcgggaagatgctgg 552
Score = 46.1 bits (23), Expect = 7e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 271 ctactcggcagcagcaacctcct 293
|||||||||||||||||||||||
Sbjct: 739 ctactcggcagcagcaacctcct 717
>gb|CN821129.1|CN821129 HRO4427_G12_N23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_G12_N23, mRNA
sequence
Length = 497
Score = 71.9 bits (36), Expect = 1e-012
Identities = 96/116 (82%)
Strand = Plus / Minus
Query: 334 accaacgtcctctttgtagtcgccatgaacctccatcaacttcccgagatcaaacttggg 393
|||||| || || |||||||| ||||| |||||||| | |||||| ||||| ||||||||
Sbjct: 152 accaacatcttccttgtagtcaccatgcacctccatgagcttccccagatcgaacttggg 93
Query: 394 ggccttgagtatcttcaccttgcggatgaagacgttttgaagtgggaagatgctgg 449
||||| | |||||||||||||||| | ||||| || || |||||||||||||
Sbjct: 92 tgccttcaagatcttcaccttgcggacatacacgttctggagcgggaagatgctgg 37
Score = 46.1 bits (23), Expect = 7e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 271 ctactcggcagcagcaacctcct 293
|||||||||||||||||||||||
Sbjct: 224 ctactcggcagcagcaacctcct 202
>gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3A mRNA, partial cds
Length = 382
Score = 67.9 bits (34), Expect = 2e-011
Identities = 94/114 (82%)
Strand = Plus / Minus
Query: 334 accaacgtcctctttgtagtcgccatgaacctccatcaacttcccgagatcaaacttggg 393
|||||| || || |||||||| ||||| |||||||| | |||||| ||||| ||||||||
Sbjct: 184 accaacatcttccttgtagtcaccatgcacctccatgagcttccccagatcgaacttggg 125
Query: 394 ggccttgagtatcttcaccttgcggatgaagacgttttgaagtgggaagatgct 447
||||| | |||||||||||||||| | ||||| || || |||||||||||
Sbjct: 124 tgccttcaagatcttcaccttgcggacatacacgttctggagcgggaagatgct 71
Score = 46.1 bits (23), Expect = 7e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 271 ctactcggcagcagcaacctcct 293
|||||||||||||||||||||||
Sbjct: 256 ctactcggcagcagcaacctcct 234
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 46.1 bits (23), Expect = 7e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1131 tacctgcccgggcggccgctcga 1153
|||||||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgctcga 1
>gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F11_K22, mRNA sequence
Length = 584
Score = 38.2 bits (19), Expect = 0.017
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1053 tggtagccgccgccgccgc 1071
|||||||||||||||||||
Sbjct: 289 tggtagccgccgccgccgc 271
>gb|AF140554.1|AF140554 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds
Length = 2073
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1055 gtagccgccgccgccgc 1071
|||||||||||||||||
Sbjct: 1489 gtagccgccgccgccgc 1473
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3004
Number of Sequences: 8143
Number of extensions: 3004
Number of successful extensions: 921
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 19
length of query: 1154
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1138
effective length of database: 4,572,175
effective search space: 5203135150
effective search space used: 5203135150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)