BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.623
(863 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Aven... 127 2e-029
gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Aven... 111 1e-024
gb|CN817338.1|CN817338 HRO4465_B10_D19ZS5 Lib AA070E1X Aven... 34 0.20
emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein 34 0.20
>gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F11_K22, mRNA sequence
Length = 584
Score = 127 bits (64), Expect = 2e-029
Identities = 94/104 (90%)
Strand = Plus / Plus
Query: 304 ggcttcgtcaccttctccacggaggacgcgatgcgcagcgccatcgagggcatgaacggc 363
|||||||||||||||||| | ||| | | |||||| ||||||||||||||||||||||
Sbjct: 54 ggcttcgtcaccttctcctctgagcagtccatgcgcgacgccatcgagggcatgaacggc 113
Query: 364 aaggagctcgacggccgcaacatcaccgttaacgaggcccagtc 407
||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 114 aaggacctcgacggccgcaacatcaccgtcaacgaggcccagtc 157
>gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_A07_B14, mRNA sequence
Length = 491
Score = 111 bits (56), Expect = 1e-024
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 347 tcgagggcatgaacggcaaggagctcgacggccgcaacatcaccgttaacgaggcccagt 406
||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 1 tcgagggcatgaacggccaggacctcgacggccgcaacatcaccgtcaacgaggcccagt 60
Query: 407 cccgcggc 414
||||||||
Sbjct: 61 cccgcggc 68
Score = 38.2 bits (19), Expect = 0.013
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 463 ggcggctacggcggtggcggtggaggctacggcgg 497
|||||||| || |||||||| || |||||||||||
Sbjct: 189 ggcggctatggtggtggcggcggcggctacggcgg 223
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 545 gcggcggcggctacggc 561
|||||||||||||||||
Sbjct: 205 gcggcggcggctacggc 221
>gb|CN817338.1|CN817338 HRO4465_B10_D19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_B10_D19, mRNA sequence
Length = 312
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 545 gcggcggcggctacggc 561
|||||||||||||||||
Sbjct: 31 gcggcggcggctacggc 47
Score = 34.2 bits (17), Expect = 0.20
Identities = 35/41 (85%)
Strand = Plus / Plus
Query: 481 ggtggaggctacggcggtggtcgtggaggctacggcggcgg 521
|||||||||||| | ||||| | || ||||||||||||||
Sbjct: 12 ggtggaggctactgtggtggcggcggcggctacggcggcgg 52
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
Length = 2287
Score = 34.2 bits (17), Expect = 0.20
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 471 cggcggtggcggtggaggcta 491
||||||||||||||| |||||
Sbjct: 2034 cggcggtggcggtggcggcta 2014
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1823
Number of Sequences: 8143
Number of extensions: 1823
Number of successful extensions: 560
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 35
length of query: 863
length of database: 4,702,463
effective HSP length: 16
effective length of query: 847
effective length of database: 4,572,175
effective search space: 3872632225
effective search space used: 3872632225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)