BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.536
(819 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816851.1|CN816851 HRO4525_E06_I11ZS5 Lib AA071E1X Aven... 341 6e-094
gb|CN814915.1|CN814915 HRO4503_H05_P09ZS5 Lib AA071E1X Aven... 335 4e-092
gb|CN819420.1|CN819420 HRO4405_G10_M19ZS5 Lib AA069E1X Aven... 238 6e-063
gb|CN816312.1|CN816312 HRO4519_C11_F21ZS5 Lib AA071E1X Aven... 236 3e-062
gb|CN815987.1|CN815987 HRO4515_F06_L11ZS5 Lib AA071E1X Aven... 168 5e-042
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 38 0.012
gb|CN818469.1|CN818469 HRO4453_C01_F01ZS5 Lib AA070E1X Aven... 34 0.19
>gb|CN816851.1|CN816851 HRO4525_E06_I11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_E06_I11, mRNA sequence
Length = 698
Score = 341 bits (172), Expect = 6e-094
Identities = 334/388 (86%)
Strand = Plus / Minus
Query: 303 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagagct 362
|||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct: 490 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtgaactgcact 431
Query: 363 cagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctggtt 422
|||||| |||| | | |||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 430 cagccttgcaagaacaggcttggtcaagtcaggcctgtagtagttgtcgctgacctggtt 371
Query: 423 tttcacagccttggccatcttgcggaactccttgcgcattacagacttgtggctgagctt 482
|| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct: 370 cttgacagccttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaaggc 311
Query: 483 cgcgggtgtgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttcc 542
||||| ||||||||||||| |||||||| || ||||||||||||| | ||||| |
Sbjct: 310 agcggggttgttctgcttctttgtcttggtcgtggagaggaccacagtcatctccttgtc 251
Query: 543 agcagctggctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtg 602
|||||| ||||| | || || || ||||||||||| | |||||||||||||||||||||
Sbjct: 250 agcagcaggctgcacagtcactgtcttcttgtttgccaggccagagtacttgtaggagtg 191
Query: 603 tacattgtagaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaa 662
||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||
Sbjct: 190 gacattgtagaggttgttgggctccttgctgaactgaaccttggcgttgctgttgccaaa 131
Query: 663 ctgcttcaccaggaaggagttgttcttc 690
|||||| | ||||||| |||||||||||
Sbjct: 130 ctgcttgatcaggaagcagttgttcttc 103
>gb|CN814915.1|CN814915 HRO4503_H05_P09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_H05_P09, mRNA sequence
Length = 725
Score = 335 bits (169), Expect = 4e-092
Identities = 349/409 (85%)
Strand = Plus / Minus
Query: 303 ctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagagct 362
|||||||||||||||||| ||||||||||||||||||||||||||||||| || | ||
Sbjct: 498 ctgcctgttcttcttcttaacaccagacttggcaacctggaggctgcggtgaactgcact 439
Query: 363 cagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctggtt 422
|||||| | || || | |||||||| ||||||||||| |||||||||| ||||||||
Sbjct: 438 cagccttgcgagagcaggcttggtcaagtcaggcctgtagtagttgtcgctgacctggtt 379
Query: 423 tttcacagccttggccatcttgcggaactccttgcgcattacagacttgtggctgagctt 482
|| || |||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct: 378 cttgacggccttggccatcttgcggaactccttgcgcatgacagtcttgtgggtgaaggc 319
Query: 483 cgcgggtgtgttctgcttcttggtcttggtagtagagaggaccacagccgagtcctttcc 542
|||||| ||||||||||||| |||||||| || ||||||||||||| | ||||| |
Sbjct: 318 agcgggtttgttctgcttctttgtcttggtcgtggagaggaccacagtcatctccttatc 259
Query: 543 agcagctggctggatcgttacagttttcttgtttgctaagccagagtacttgtaggagtg 602
|||||| ||||| | || || || ||||||||||| | |||||||||||||||||||||
Sbjct: 258 agcagccggctgcacagtcactgtcttcttgtttgccaggccagagtacttgtaggagtg 199
Query: 603 tacattgtagaggttgttgggctccttggtgaactgcaccttggcattgccgttgccaaa 662
||||||||||||||||||||||||||| ||||||| |||||||| |||| |||||||||
Sbjct: 198 gacattgtagaggttgttgggctccttgctgaactgaaccttggcgttgctgttgccaaa 139
Query: 663 ctgcttcaccaggaaggagttgttcttcctcacaatctgccagatcaga 711
|||||| | ||||||| ||||||||||| | |||| || ||||| ||||
Sbjct: 138 ctgcttgatcaggaagcagttgttcttcttgacaagctcccagaccaga 90
>gb|CN819420.1|CN819420 HRO4405_G10_M19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_G10_M19, mRNA
sequence
Length = 520
Score = 238 bits (120), Expect = 6e-063
Identities = 198/224 (88%)
Strand = Plus / Minus
Query: 301 ggctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagag 360
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 313 ggctgcctgttcttcttcttgatgccagacttggaaacctggaggctgcggtacacagag 254
Query: 361 ctcagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctgg 420
|||||||| |||| |||| | ||||||||||||||||||| ||||||| || |||||||
Sbjct: 253 ctcagccttgcaagagccggcgtggtcagatcaggcctgtagtagttgttgcaaacctgg 194
Query: 421 tttttcacagccttggccatcttgcggaactccttgcgcattacagacttgtggctgagc 480
|| || ||||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 193 ttcttgacagccttggccatcttgcggaactccttgcgcatcacattcttgtgctggagc 134
Query: 481 ttcgcgggtgtgttctgcttcttggtcttggtagtagagaggac 524
|| | || | ||||||||||||||||||||| || ||||||||
Sbjct: 133 ttagaaggggcgttctgcttcttggtcttggtcgtggagaggac 90
>gb|CN816312.1|CN816312 HRO4519_C11_F21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_C11_F21, mRNA sequence
Length = 509
Score = 236 bits (119), Expect = 3e-062
Identities = 203/231 (87%)
Strand = Plus / Minus
Query: 301 ggctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagag 360
|||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||
Sbjct: 251 ggctgcctgttcttcttcttgatgccagacttggaaacctggaggctgcggtagacagag 192
Query: 361 ctcagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctgg 420
|||||||| |||| |||| ||||||||||||||||||||| ||||||| || |||||||
Sbjct: 191 ctcagccttgcaagagccggcttggtcagatcaggcctgtagtagttgttgcaaacctgg 132
Query: 421 tttttcacagccttggccatcttgcggaactccttgcgcattacagacttgtggctgagc 480
|| || || |||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 131 ttcttgacggccttggccatcttgcggaactccttgcgcatcacattcttgtgctggagc 72
Query: 481 ttcgcgggtgtgttctgcttcttggtcttggtagtagagaggaccacagcc 531
|| || || | |||||||||||||||||| || || |||||||| ||||||
Sbjct: 71 ttagcaggggcgttctgcttcttggtctttgtcgtggagaggacgacagcc 21
>gb|CN815987.1|CN815987 HRO4515_F06_L11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_F06_L11, mRNA sequence
Length = 419
Score = 168 bits (85), Expect = 5e-042
Identities = 124/137 (90%)
Strand = Plus / Minus
Query: 301 ggctgcctgttcttcttcttgacaccagacttggcaacctggaggctgcggtacacagag 360
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 137 ggctgcctgttcttcttcttgatgccagacttggaaacctggaggctgcggtacacagag 78
Query: 361 ctcagcctaccaagggccgacttggtcagatcaggcctgtaatagttgtcgccaacctgg 420
|||||||| |||| |||| ||||||||||||||||||||| ||||||| || |||| ||
Sbjct: 77 ctcagccttgcaagagccggcttggtcagatcaggcctgtagtagttgttgcaaaccagg 18
Query: 421 tttttcacagccttggc 437
|| || |||||||||||
Sbjct: 17 ttcttgacagccttggc 1
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 801 tacctgcccgggcggccgc 819
|||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgc 5
>gb|CN818469.1|CN818469 HRO4453_C01_F01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_C01_F01, mRNA sequence
Length = 689
Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 234 tggagacattggataaa 250
|||||||||||||||||
Sbjct: 208 tggagacattggataaa 224
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2269
Number of Sequences: 8143
Number of extensions: 2269
Number of successful extensions: 648
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 14
length of query: 819
length of database: 4,702,463
effective HSP length: 16
effective length of query: 803
effective length of database: 4,572,175
effective search space: 3671456525
effective search space used: 3671456525
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)