BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.49
(1833 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Aven... 402 e-112
gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Aven... 391 e-108
gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Aven... 373 e-103
gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Aven... 365 e-101
gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Aven... 361 1e-099
gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Aven... 309 5e-084
gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Aven... 240 4e-063
gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Aven... 190 3e-048
gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Aven... 188 1e-047
gb|BE439343.1|BE439343 CDO98_WHE05D07R ITEC CDO Oat cDNA Li... 34 0.42
gb|CN816578.1|CN816578 HRO4522_D04_G08ZS5 Lib AA071E1X Aven... 34 0.42
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G09_N17, mRNA sequence
Length = 412
Score = 402 bits (203), Expect = e-112
Identities = 260/279 (93%)
Strand = Plus / Plus
Query: 1182 aagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcacccg 1241
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 aagaagagcgtcgagacctacaagatctacatcttcaaggtgctgaagcaggtgcacccg 78
Query: 1242 gacattggcatctcctccaaggccatgtcgatcatgaactccttcattaacgatatcttc 1301
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 79 gacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttt 138
Query: 1302 gagaagctcgctgctgaggccgccaagctcgcgcgctataacaagaagcctaccatcacc 1361
||||| ||||||| |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct: 139 gagaaactcgctggcgaggccgccaagctggcgcgctacaacaagaagcccaccatcacc 198
Query: 1362 tcccgtgagatccagacctccgtgcgcctcgtccttcccggggagctcgccaagcacgcc 1421
||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct: 199 tcccgggagatccagacctccgtccgccttgtcctccccggcgagctcgccaagcacgcc 258
Query: 1422 gtctccgagggcaccaaggccgtcaccaagttcacctcg 1460
|| || |||||||||||||||||||||||||||||||||
Sbjct: 259 gtgtcagagggcaccaaggccgtcaccaagttcacctcg 297
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C01_F01, mRNA sequence
Length = 365
Score = 391 bits (197), Expect = e-108
Identities = 284/313 (90%)
Strand = Plus / Plus
Query: 1141 ccaaggagggcggcgagggcaagaggggcaggaagaagggcaagaagagcgtggagacct 1200
||||||||||||||||||| |||| ||||| |||||||| ||||||||||| |||||||
Sbjct: 19 ccaaggagggcggcgaggggaagaagggcaagaagaaggcgaagaagagcgtcgagacct 78
Query: 1201 acaagatctacatcttcaaggtgctgaagcaggtgcacccggacattggcatctcctcca 1260
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct: 79 acaagatctacatcttcaaggtcctcaagcaggtgcacccggacatcggcatctcctcca 138
Query: 1261 aggccatgtcgatcatgaactccttcattaacgatatcttcgagaagctcgctgctgagg 1320
|||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| |||
Sbjct: 139 aggccatgtccatcatgaactccttcatcaacgacatctttgagaaactcgctggcgagt 198
Query: 1321 ccgccaagctcgcgcgctataacaagaagcctaccatcacctcccgtgagatccagacct 1380
| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 199 ctgccaagctcgcccgctataacaagaagcccaccatcacctcccgggagatccagacct 258
Query: 1381 ccgtgcgcctcgtccttcccggggagctcgccaagcacgccgtctccgagggcaccaagg 1440
|||| ||||| ||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 259 ccgtccgccttgtcctccccggcgagcttgccaagcacgcggtctccgagggcaccaagg 318
Query: 1441 ccgtcaccaagtt 1453
| ||||| |||||
Sbjct: 319 ctgtcacaaagtt 331
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_A08_B15, mRNA sequence
Length = 655
Score = 373 bits (188), Expect = e-103
Identities = 287/320 (89%)
Strand = Plus / Plus
Query: 1141 ccaaggagggcggcgagggcaagaggggcaggaagaagggcaagaagagcgtggagacct 1200
||||||||||||||||||| |||| ||||| |||||| | |||||||||||| ||||| |
Sbjct: 31 ccaaggagggcggcgaggggaagaagggcaagaagaaagccaagaagagcgtagagacat 90
Query: 1201 acaagatctacatcttcaaggtgctgaagcaggtgcacccggacattggcatctcctcca 1260
|||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||
Sbjct: 91 acaagatctacatcttcaaggtcctgaagcaggtgcatcccgacatcggcatctcctcca 150
Query: 1261 aggccatgtcgatcatgaactccttcattaacgatatcttcgagaagctcgctgctgagg 1320
|||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| |||
Sbjct: 151 aggccatgtccatcatgaactccttcatcaacgacatcttcgagaaactcgctggcgagt 210
Query: 1321 ccgccaagctcgcgcgctataacaagaagcctaccatcacctcccgtgagatccagacct 1380
| || ||||| ||| | || ||||||||||| |||||||||||||| |||||||||||||
Sbjct: 211 cggcaaagcttgcgaggtacaacaagaagcccaccatcacctcccgggagatccagacct 270
Query: 1381 ccgtgcgcctcgtccttcccggggagctcgccaagcacgccgtctccgagggcaccaagg 1440
|||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 271 ccgtccgccttgtcctccccggggagctcgccaagcatgccgtgtccgagggcaccaagg 330
Query: 1441 ccgtcaccaagttcacctcg 1460
| ||||| ||||||||||||
Sbjct: 331 ctgtcacgaagttcacctcg 350
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
sequence
Length = 454
Score = 365 bits (184), Expect = e-101
Identities = 247/268 (92%)
Strand = Plus / Plus
Query: 1189 gcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcacccggacattg 1248
|||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct: 11 gcgtcgagacctacaagatctacatcttcaaggtcctcaagcaggtgcacccggacatcg 70
Query: 1249 gcatctcctccaaggccatgtcgatcatgaactccttcattaacgatatcttcgagaagc 1308
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 71 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 130
Query: 1309 tcgctgctgaggccgccaagctcgcgcgctataacaagaagcctaccatcacctcccgtg 1368
|||||| ||| |||||||||| || ||||| ||||||||||| |||||||||||||| |
Sbjct: 131 tcgctggcgagtccgccaagctggcccgctacaacaagaagcccaccatcacctcccggg 190
Query: 1369 agatccagacctccgtgcgcctcgtccttcccggggagctcgccaagcacgccgtctccg 1428
|||||||||||||||| ||||||||||| || |||||||||||||||||||| ||||| |
Sbjct: 191 agatccagacctccgtccgcctcgtcctcccaggggagctcgccaagcacgctgtctctg 250
Query: 1429 agggcaccaaggccgtcaccaagttcac 1456
||||||||||||||||||| ||||||||
Sbjct: 251 agggcaccaaggccgtcacaaagttcac 278
>gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D06_H12, mRNA
sequence
Length = 415
Score = 361 bits (182), Expect = 1e-099
Identities = 263/290 (90%)
Strand = Plus / Plus
Query: 1167 ggcaggaagaagggcaagaagagcgtggagacctacaagatctacatcttcaaggtgctg 1226
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 17 ggcaagaagaaggcaaagaagagcgtcgagacctacaagatctacatcttcaaggtgctc 76
Query: 1227 aagcaggtgcacccggacattggcatctcctccaaggccatgtcgatcatgaactccttc 1286
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct: 77 aagcaggtgcacccggacatcggcatatcctccaaggccatgtccatcatgaactccttc 136
Query: 1287 attaacgatatcttcgagaagctcgctgctgaggccgccaagctcgcgcgctataacaag 1346
|||||||| ||||| |||||||| |||| ||| | ||||||||||| ||||| ||||||
Sbjct: 137 attaacgacatctttgagaagcttgctggggagtctgccaagctcgctcgctacaacaag 196
Query: 1347 aagcctaccatcacctcccgtgagatccagacctccgtgcgcctcgtccttcccggggag 1406
||||| |||||||||||||| ||||| |||||||| || ||||||||||| ||||| |||
Sbjct: 197 aagcccaccatcacctcccgggagatacagacctctgtccgcctcgtcctccccggcgag 256
Query: 1407 ctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcac 1456
|||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 257 ctcgccaagcacgctgtctctgagggcaccaaggctgtcaccaagttcac 306
>gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_H02_P04, mRNA sequence
Length = 472
Score = 309 bits (156), Expect = 5e-084
Identities = 237/264 (89%)
Strand = Plus / Plus
Query: 1193 ggagacctacaagatctacatcttcaaggtgctgaagcaggtgcacccggacattggcat 1252
|||||||||||||||||||||||||||||| || |||||||| ||||| ||||| |||||
Sbjct: 10 ggagacctacaagatctacatcttcaaggtcctcaagcaggtccaccccgacatcggcat 69
Query: 1253 ctcctccaaggccatgtcgatcatgaactccttcattaacgatatcttcgagaagctcgc 1312
|||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||
Sbjct: 70 ctcctccaaggccatgtccatcatgaactccttcatcaacgatatctttgagaagctggc 129
Query: 1313 tgctgaggccgccaagctcgcgcgctataacaagaagcctaccatcacctcccgtgagat 1372
|| ||| | |||||||||||| | || ||||||||||| |||||||||||| | |||||
Sbjct: 130 tggcgagtctgccaagctcgcgaggtacaacaagaagcccaccatcacctccagggagat 189
Query: 1373 ccagacctccgtgcgcctcgtccttcccggggagctcgccaagcacgccgtctccgaggg 1432
|||||| || || || || || ||||| |||||||||||||||||||||||||| |||||
Sbjct: 190 ccagacttctgttcgtcttgtgcttccaggggagctcgccaagcacgccgtctctgaggg 249
Query: 1433 caccaaggccgtcaccaagttcac 1456
||||||||||||||||||||||||
Sbjct: 250 caccaaggccgtcaccaagttcac 273
>gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_C10_F20, mRNA sequence
Length = 360
Score = 240 bits (121), Expect = 4e-063
Identities = 187/209 (89%)
Strand = Plus / Plus
Query: 1248 ggcatctcctccaaggccatgtcgatcatgaactccttcattaacgatatcttcgagaag 1307
||||| |||||| |||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 11 ggcatatcctcctaggccatgtccatcatgaactccttcattaacgacatctttgagaag 70
Query: 1308 ctcgctgctgaggccgccaagctcgcgcgctataacaagaagcctaccatcacctcccgt 1367
|| |||| ||| | ||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct: 71 cttgctggggagtctgccaagctcgctcgctacaacaagaagcccaccatcacctcccgg 130
Query: 1368 gagatccagacctccgtgcgcctcgtccttcccggggagctcgccaagcacgccgtctcc 1427
||||| |||||||| || ||||||||||| ||||| ||||||||||||||||| |||||
Sbjct: 131 gagatacagacctctgtccgcctcgtcctccccggcgagctcgccaagcacgctgtctct 190
Query: 1428 gagggcaccaaggccgtcaccaagttcac 1456
|||||||||||||| ||||||||||||||
Sbjct: 191 gagggcaccaaggctgtcaccaagttcac 219
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_F01_K01, mRNA sequence
Length = 361
Score = 190 bits (96), Expect = 3e-048
Identities = 132/144 (91%)
Strand = Plus / Plus
Query: 1316 tgaggccgccaagctcgcgcgctataacaagaagcctaccatcacctcccgtgagatcca 1375
|||| |||||||||||||| | || ||||||||||| |||||||||||| | ||||||||
Sbjct: 26 tgagtccgccaagctcgcgaggtacaacaagaagcccaccatcacctccagggagatcca 85
Query: 1376 gacctccgtgcgcctcgtccttcccggggagctcgccaagcacgccgtctccgagggcac 1435
||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 86 gacctccgtccgcctcgtcctccccggcgagctcgccaagcacgctgtctccgagggcac 145
Query: 1436 caaggccgtcaccaagttcacctc 1459
|||||| |||||||||||||||||
Sbjct: 146 caaggctgtcaccaagttcacctc 169
>gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E01_I01, mRNA sequence
Length = 384
Score = 188 bits (95), Expect = 1e-047
Identities = 129/139 (92%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 1321 ccgccaagctcgcgcgctataacaagaagcctaccatcacctcccgtgagatccagacct 1380
||||||||||||| |||| || ||||||||| |||||||||||| | |||||||||||||
Sbjct: 34 ccgccaagctcgcccgcttta-caagaagcccaccatcacctccagggagatccagacct 92
Query: 1381 ccgtgcgcctcgtccttcccggggagctcgccaagcacgccgtctccgagggcaccaagg 1440
|||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 93 ccgtccgcctcgtcctccccggggaactcgccaagcacgccgtctctgagggcaccaagg 152
Query: 1441 ccgtcaccaagttcacctc 1459
|||||||||||||||||||
Sbjct: 153 ccgtcaccaagttcacctc 171
>gb|BE439343.1|BE439343 CDO98_WHE05D07R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO98_WHE05D07, mRNA sequence
Length = 374
Score = 34.2 bits (17), Expect = 0.42
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1563 ctgtctgtagcaactgt 1579
|||||||||||||||||
Sbjct: 320 ctgtctgtagcaactgt 304
>gb|CN816578.1|CN816578 HRO4522_D04_G08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_D04_G08, mRNA sequence
Length = 533
Score = 34.2 bits (17), Expect = 0.42
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1379 ctccgtgcgcctcgtccttcc 1399
||||||||||||| |||||||
Sbjct: 451 ctccgtgcgcctcctccttcc 471
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4304
Number of Sequences: 8143
Number of extensions: 4304
Number of successful extensions: 1327
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1312
Number of HSP's gapped (non-prelim): 12
length of query: 1833
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1816
effective length of database: 4,564,032
effective search space: 8288282112
effective search space used: 8288282112
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)