BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.489
(1666 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815233.1|CN815233 HRO4507_D04_H07ZS5 Lib AA071E1X Aven... 545 e-155
gb|CN818696.1|CN818696 HRO4457_F04_L07ZS5 Lib AA070E1X Aven... 141 2e-033
gb|AI978372.1|AI978372 CDO507.R Oat Etiolated Leaf cDNA Lib... 78 3e-014
gb|AA231704.1|AA231704 CDO507.R cDNA from oat Avena sativa ... 64 4e-010
gb|BE439264.1|BE439264 CDO507_WHE04H01F ITEC CDO Oat cDNA L... 40 0.006
gb|BE439279.1|BE439279 CDO507_WHE04B09F ITEC CDO Oat cDNA L... 40 0.006
gb|BE439290.1|BE439290 CDO507_WHE04B09R ITEC CDO Oat cDNA L... 38 0.025
gb|AA231844.1|AA231844 CDO507.F cDNA from oat Avena sativa ... 36 0.097
>gb|CN815233.1|CN815233 HRO4507_D04_H07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_D04_H07, mRNA sequence
Length = 654
Score = 545 bits (275), Expect = e-155
Identities = 428/479 (89%)
Strand = Plus / Plus
Query: 827 aagggaggaggtgaaaggcagttcaatgggcttgtcgatgtctaccgcaagacactcaag 886
||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct: 27 aagggtggaggtgagaggcagttcaatggccttgttgatgtctaccgcaagactctcaag 86
Query: 887 tctgatggtattgctgggctttaccgtggatttaacatctcctgtgttggaatcattgtt 946
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 87 acagatggtattgctgggctttaccgtggattcaacatctcctgtgttggaatcattgtc 146
Query: 947 tatcgtggtctgtactttgggctctatgattccatcaagccagttgtccttactggcaac 1006
|| ||||||||||||||||| | |||||||| | ||||||||| |||| |||||||
Sbjct: 147 taccgtggtctgtactttggattgtatgattctctgaagccagttctcctcactggcact 206
Query: 1007 ctccaggacaatttctttgccagtttcgctctgggttggctgatcactaatggtgctggt 1066
||||||||||| ||||||||||| || ||||| |||||| ||||||| || ||||| |||
Sbjct: 207 ctccaggacaacttctttgccagctttgctcttggttggttgatcaccaacggtgcaggt 266
Query: 1067 cttgcatcttaccccatcgataccgtccgcagaaggatgatgatgacatctggtgaggct 1126
||||||||||||||||| || |||||||||||||||||||||||||| ||||| || ||
Sbjct: 267 cttgcatcttaccccattgacaccgtccgcagaaggatgatgatgacctctggagaagcc 326
Query: 1127 gtcaagtacaagagctccttggacgcgttccagcagattcttaagaaggaagggcccaag 1186
||||||||||||||||| || || || ||||||||||| || |||||||| || | |||
Sbjct: 327 gtcaagtacaagagctcattcgatgctttccagcagatcctgaagaaggagggtgctaag 386
Query: 1187 tccctgttcaagggtgctggtgctaacattcttcgtgccattgctggtgctggtgtgctt 1246
||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 387 tccctcttcaagggtgctggtgccaacatcctccgtgccattgctggtgctggtgtgctt 446
Query: 1247 tctggctatgaccagctccagatcctcttcttcggaaagaagtacggctccggcggtgc 1305
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 447 tctggctatgaccagcttcagatcctcttcttcggcaagaagtacggctcaggcggtgc 505
>gb|CN818696.1|CN818696 HRO4457_F04_L07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_F04_L07, mRNA sequence
Length = 435
Score = 141 bits (71), Expect = 2e-033
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 1223 gccattgctggtgctggtgtgctttctggctatgaccagctccagatcctcttcttcgga 1282
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10 gccattgctggtgctggtgtgctttctggctatgaccagcttcagatcctcttcttcggc 69
Query: 1283 aagaagtacggctccggcggtgc 1305
|||||||||||||| ||||||||
Sbjct: 70 aagaagtacggctcaggcggtgc 92
>gb|AI978372.1|AI978372 CDO507.R Oat Etiolated Leaf cDNA Library Avena sativa cDNA clone
CDO507, mRNA sequence
Length = 394
Score = 77.8 bits (39), Expect = 3e-014
Identities = 132/163 (80%)
Strand = Plus / Plus
Query: 146 atggcggaccaggctaaccaacccactgtccttcataagctcggtggccagttccacctg 205
|||||||||||||| |||||||| |||| |||| ||| ||||||| |||||||||||
Sbjct: 117 atggcggaccaggccaaccaaccgtctgttgttcagaagttcggtggacagttccacctt 176
Query: 206 cgctcgatcatctctgaaggtgtacgggcccgtaacatatgcccatctgtctcatcttat 265
|||| | | |||||| || ||| || ||||| ||||| ||||| ||||| ||| | |||
Sbjct: 177 ggctccagcttctctggagttgtccgtgcccgcaacatgtgcccttctgtgtcagcctat 236
Query: 266 gaaaggagatttgccacaaggaactacatgacccagagccttt 308
|| ||| | || ||||||| | ||||||||| ||||||||||
Sbjct: 237 gataggcgcttcaccacaagcagctacatgactcagagccttt 279
>gb|AA231704.1|AA231704 CDO507.R cDNA from oat Avena sativa cDNA clone CDO507, mRNA
sequence
Length = 271
Score = 63.9 bits (32), Expect = 4e-010
Identities = 122/152 (80%)
Strand = Plus / Plus
Query: 146 atggcggaccaggctaaccaacccactgtccttcataagctcggtggccagttccacctg 205
|||||||||||||| |||||||| |||| |||| ||| ||||||| |||||||||||
Sbjct: 117 atggcggaccaggccaaccaaccgtctgttgttcagaagttcggtggacagttccacctt 176
Query: 206 cgctcgatcatctctgaaggtgtacgggcccgtaacatatgcccatctgtctcatcttat 265
|||| | | |||||| || ||| || ||||| ||||| ||||| ||||| ||| | |||
Sbjct: 177 ggctccagcttctctggagttgtccgtgcccgcaacatgtgcccttctgtgtcagcctat 236
Query: 266 gaaaggagatttgccacaaggaactacatgac 297
|| ||| | || ||||||| | |||||||||
Sbjct: 237 gataggcgcttcaccacaagcagctacatgac 268
>gb|BE439264.1|BE439264 CDO507_WHE04H01F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO507_WHE04H01, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.006
Identities = 53/63 (84%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 1320 atgatgacgaacaagagcagtgtgtgttcccggtcctttccaatcaggatctggtgaagt 1379
||||||||||||||||| | || ||||||| ||||| || ||||||||||||||| |
Sbjct: 326 atgatgacgaacaagagaa--gtctgttcccagtcctgccctttcaggatctggtgaact 269
Query: 1380 ttt 1382
|||
Sbjct: 268 ttt 266
>gb|BE439279.1|BE439279 CDO507_WHE04B09F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO507_WHE04B09, mRNA sequence
Length = 364
Score = 40.1 bits (20), Expect = 0.006
Identities = 53/63 (84%), Gaps = 2/63 (3%)
Strand = Plus / Minus
Query: 1320 atgatgacgaacaagagcagtgtgtgttcccggtcctttccaatcaggatctggtgaagt 1379
||||||||||||||||| | || ||||||| ||||| || ||||||||||||||| |
Sbjct: 326 atgatgacgaacaagagaa--gtctgttcccagtcctgccctttcaggatctggtgaact 269
Query: 1380 ttt 1382
|||
Sbjct: 268 ttt 266
>gb|BE439290.1|BE439290 CDO507_WHE04B09R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO507_WHE04B09, mRNA sequence
Length = 167
Score = 38.2 bits (19), Expect = 0.025
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 146 atggcggaccaggctaaccaacc 168
|||||||||||||| ||||||||
Sbjct: 131 atggcggaccaggccaaccaacc 153
>gb|AA231844.1|AA231844 CDO507.F cDNA from oat Avena sativa cDNA clone CDO507, mRNA sequence
Length = 324
Score = 36.2 bits (18), Expect = 0.097
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 1320 atgatgacgaacaagagcagtgtgt 1344
||||||||||||||||| ||| |||
Sbjct: 308 atgatgacgaacaagagaagtntgt 284
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4900
Number of Sequences: 8143
Number of extensions: 4900
Number of successful extensions: 1296
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1278
Number of HSP's gapped (non-prelim): 16
length of query: 1666
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1649
effective length of database: 4,564,032
effective search space: 7526088768
effective search space used: 7526088768
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)